Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 6,002,552 – 6,002,662 |
Length | 110 |
Max. P | 0.631125 |
Location | 6,002,552 – 6,002,662 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -32.14 |
Consensus MFE | -20.66 |
Energy contribution | -19.74 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.31 |
Mean z-score | -2.26 |
Structure conservation index | 0.64 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 6002552 110 + 22224390 AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCCCAACAACUUUGGAG----------CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG .....((((.(((((((((((.(((....)))))))...(((((.(...((((....(((((.((((.....)))).)----------))))...))))...).)))))))))))))))) ( -31.50) >DroSec_CAF1 22672 107 + 1 AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCC---CAACUUUGGAG----------CAUUAAUGGGCCAAUCGUUUUUGCGGCUUAUG .....((((.(((((((((((.(((....)))))))...(((((.....((((....(((((.(---((....))).)----------))))...)))).....)))))))))))))))) ( -29.80) >DroSim_CAF1 19282 107 + 1 AUGUAUAUAUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCA---CAACUUUGGAG----------CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG .....((((.(((((((((((.(((....)))))))...(((((.(...((((....(((((..---((....))..)----------))))...))))...).)))))))))))))))) ( -28.30) >DroEre_CAF1 17346 112 + 1 -----UAUGUGGCUGUGUGGGAUGCAAAUGCACCCACUUAAAAGACAGUGCUUUUAAAGUGCCC---CAACUUUGGGGCAUAAAUGGGCAUUAAUGGGCCAAGCGUUUUUGCAGCUUAUC -----.....(((((((((((.(((....))))))))...(((((((((((((.....((((((---((....))))))))....))))))).....((...)))))))))))))).... ( -43.80) >DroYak_CAF1 19732 107 + 1 AUGUAUAUGUAGCGGUAUGGGAUGCAAAUGUAUCCACUUAAAAUACAUAGCUUUUAAAGUGCCC---AAACUUUGGAG----------CAUUAAUGGGCCAAACGCUUUUGCAGCUUAUG .((((.....((((((((.((((((....)))))).......))))...((((....(((((((---(.....))).)----------))))...))))....))))..))))....... ( -27.30) >consensus AUGUAUAUGUAGCUGCAUGGGAUGCAAAUGUACCCACUUAAAACACAGAGCUUUUAAAGUGCCC___CAACUUUGGAG__________CAUUAAUGGGCCAAGCGUUUUUGCGGCUUAUG .....((((.(((((((((((.(((....)))))))................((((((((.........))))))))................................))))))))))) (-20.66 = -19.74 + -0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:13 2006