Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,968,356 – 5,968,456 |
Length | 100 |
Max. P | 0.876354 |
Location | 5,968,356 – 5,968,456 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.88 |
Mean single sequence MFE | -15.50 |
Consensus MFE | -13.59 |
Energy contribution | -13.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -2.03 |
Structure conservation index | 0.88 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876354 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5968356 100 - 22224390 AAAGAAAAUUCAAUAUAAUCAACAA---------------ACGAUAGCCAAUCA-----GUUAUCGACCGCGACCCCACAAACAUGAAAUUGAUGUAUUGAAAAAGAGUGAUUAACACAA ........(((((((((.((((...---------------.(((((((......-----)))))))............((....))...))))))))))))).....(((.....))).. ( -17.70) >DroSim_CAF1 2499 100 - 1 AAAGAAAAUUCAAUAUAAUCUACAA---------------ACGAUAGCCAAUCA-----GUUAUCGACCGCGACCCCACAAACAUGAAAUUAAUGUAUUGAAAAAGAGUGAUUAACACAA ........(((((((((........---------------.(((((((......-----)))))))............((....)).......))))))))).....(((.....))).. ( -15.30) >DroYak_CAF1 2428 120 - 1 AAAGAAAAUUCAAUAUAAUCUACAAUCUACAAUCCACAAUAUGAUAGCCAAUCAGUUCAGUUAUCGAACGCGACCCCACAAACAUGAAAUUAAUGUAUUGAAAAAGAGUGAUUAACACAA ........(((((((((........................((((.....))))((((.......))))........................))))))))).....(((.....))).. ( -13.50) >consensus AAAGAAAAUUCAAUAUAAUCUACAA_______________ACGAUAGCCAAUCA_____GUUAUCGACCGCGACCCCACAAACAUGAAAUUAAUGUAUUGAAAAAGAGUGAUUAACACAA ........(((((((((........................(((((((...........)))))))............((....)).......))))))))).....(((.....))).. (-13.59 = -13.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:51 2006