Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,963,504 – 5,963,616 |
Length | 112 |
Max. P | 0.716767 |
Location | 5,963,504 – 5,963,616 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 98.81 |
Mean single sequence MFE | -24.07 |
Consensus MFE | -22.59 |
Energy contribution | -22.37 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.85 |
Structure conservation index | 0.94 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5963504 112 + 22224390 UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA .....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..(((((..(((....)))..)))))....))))).))....)))).. ( -23.60) >DroEre_CAF1 15102 112 + 1 UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAAAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUAAAUGGCUA .....((((..((((..((.(((.((((((.......)))))).))).((((((((((((((........))).)))))))))))............)).))))..)))).. ( -25.00) >DroYak_CAF1 10930 112 + 1 UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA .....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..(((((..(((....)))..)))))....))))).))....)))).. ( -23.60) >consensus UACAUGCCGAGUAUGCUGCAGGUUUAUAUAUAUGUUUUAUAUAUACCGUAUACAUUUGUAUUAUUUAUAGAGUCAUAGAUGUGUGUCUGUUAUUAUAGUUCAUUAAUGGCUA .....((((.((((((....(((.((((((.......)))))).)))))))))...((.(((((..((((((.((((....)))).)).)))).))))).))....)))).. (-22.59 = -22.37 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006