Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 775,504 – 775,595 |
Length | 91 |
Max. P | 0.827708 |
Location | 775,504 – 775,595 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.45 |
Mean single sequence MFE | -34.54 |
Consensus MFE | -21.46 |
Energy contribution | -21.42 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -2.33 |
Structure conservation index | 0.62 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.827708 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 775504 91 + 22224390 AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUGUGUGCCGAAAACGUG-------GGGCC-GAGGGGAAACAGAUGCCCAGA-AGACUGGGAAAUGCC ...((..((((.....(((((((((........)))).))))).......-------((((.-....(....)....))))...-.....))))...)). ( -27.40) >DroSec_CAF1 89671 91 + 1 AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG-------GGGCC-AAGGGGAAAGAGAUGCCCAGA-AGACUGGGAAAUGCC ...((......)).....(((..((((....(((((..((((........-------)))).-..)))))....))))(((((.-...)))))....))) ( -28.90) >DroSim_CAF1 50873 91 + 1 AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG-------GGGCC-AAGGGGAAAGAGAUGGCCAGA-AGACUGGGAAAUGCC ...((..((((.....(((((((..((....(((((..((((........-------)))).-..)))))..))..))))).))-.....))))...)). ( -29.10) >DroEre_CAF1 104083 98 + 1 CUAGUCAUACUGCAAAUCGACCACGUCGAAAUCUGUGUGCCCCAAUCGUGCCGAGG-GGGCA-GAGGGGAAACAGAUACCCAGCAGGACUGGGAAAUGCC ((((((...((((...(((((...))))).((((((...((((..((.((((....-.))))-))))))..)))))).....))))))))))........ ( -38.80) >DroYak_CAF1 91664 100 + 1 GCAGUCCUGCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAUCGUGCUCAGCGGAGCACGAGGGGAAACAGAUACCCGGCGGGACUGGGAAAUGCC .(((((((((((....(((((...)))))....(((((.(((...((((((((....)))))))).)))..)))))....)))))))))))......... ( -48.50) >consensus AUAGCUAUCCUGCAAAUCGGCCACGUCGAAAUCUCUGUGCCCAAAACGUG_______GGGCC_GAGGGGAAACAGAUGCCCAGA_AGACUGGGAAAUGCC ...........(((..(((((...))))).((((((...(((.....((..........)).....)))..)))))).(((((.....)))))...))). (-21.46 = -21.42 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:17 2006