Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,935,440 – 5,935,546 |
Length | 106 |
Max. P | 0.542174 |
Location | 5,935,440 – 5,935,546 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 81.47 |
Mean single sequence MFE | -26.93 |
Consensus MFE | -15.34 |
Energy contribution | -16.96 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.08 |
Mean z-score | -1.99 |
Structure conservation index | 0.57 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5935440 106 + 22224390 AAAAUAGAGCUGGAACAAAAAUCGAUGAUUUUUUCGAUUGC------------ACGCUGGCAAGCGGUUUACAAC-AUUGAUAUCGAUAAUAAACUAACAGCGAAAUGGCCUAGCUGUA ....((.((((((..((..((((((........))))))..------------.((((((....)((((((....-((((....))))..))))))..)))))...))..)))))).)) ( -27.40) >DroSec_CAF1 23105 105 + 1 AAAAUAGAGCUGGAACAAAAAUCGAUGACUU-UUCGAUUGC------------ACGCUGGCAAGCGGUUUACAAC-AUUGAUAUCGAUAACAAGCUAACUGCGAAAUGGCCUAGCUGUA ....((.((((((..((...(((((((.(..-.......((------------.((((....)))))).......-...).))))))).....((.....))....))..)))))).)) ( -25.31) >DroEre_CAF1 22711 113 + 1 AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU-UUCGAUUGCCGCGUUGCGGCCACACUAGCAAGCGGUUUACAACUAAUUAUAUCGAUA-----AUAAUCGAUAAAUGGACUUACUGUA ........(((((......((((((......-.))))))(((((...)))))....)))))..(((((......(((....(((((((.-----...)))))))..)))....))))). ( -29.50) >DroYak_CAF1 25546 117 + 1 AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU-UUCGAUUGCCCCGAUGCGGUCACACUAGCAAGCGGUUUACAAC-AUUGAUAUCGAUAAUUCAAUAAUCGAAAAAUGGCCUUGCUGUA ........(((((...(((((((...)))))-)).((((((......))))))...)))))..(((((......(-(((....(((((.........)))))..)))).....))))). ( -25.50) >consensus AAAAUAGAGCUGGAACAAAAAUCGAUGAUUU_UUCGAUUGC____________ACACUAGCAAGCGGUUUACAAC_AUUGAUAUCGAUAAUAAAAUAACCGAGAAAUGGCCUAGCUGUA ....((.((((((..((..((((((........))))))........................((((((.......((((....))))........))))))....))..)))))).)) (-15.34 = -16.96 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:26 2006