Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,909,968 – 5,910,062 |
Length | 94 |
Max. P | 0.824272 |
Location | 5,909,968 – 5,910,062 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.69 |
Mean single sequence MFE | -25.57 |
Consensus MFE | -19.40 |
Energy contribution | -20.78 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.08 |
Mean z-score | -1.77 |
Structure conservation index | 0.76 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824272 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5909968 94 + 22224390 UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGUACGCACCCAAACGACGAGGAAACGGGGAGGAAUGGCAACAUAAUCUUGUUU-------------------------- .((((((((.....((((((.....((((......))))((((....))))..............))))))...(((....)))..))))))))-------------------------- ( -25.80) >DroSec_CAF1 4778 95 + 1 UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACCCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC------------------------- .((((((((....((((((......((((......))))))))))((.((((..((....))...))))..)).(((....)))..)))))))).------------------------- ( -27.00) >DroSim_CAF1 5193 95 + 1 UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACGCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC------------------------- .((((((((.....(((((.....(((((......)))))(((.....)))...(((........)))))))).(((....)))..)))))))).------------------------- ( -26.90) >DroEre_CAF1 4834 120 + 1 UGAACGAGAAUAAGUCUCCGAAGAUACUUUUAAUUAAGUGGCGGCGCACCCAAUCAACGACGAAAUGGCGAGGAAUGGCAACAAGAUCUUGCGAAUUUUACAAAUAGUUUAACAGGGUAU .............(.(.(((....(((((......))))).))).))((((................((((((..((....))...))))))(((((........)))))....)))).. ( -22.60) >consensus UGAACGAGAAUAAGUCUCCGAAGACACUUUUAAUUAAGUGGGGACGCACCCAAACCACAAGGAAAUGGGGAGGAAUGGCAACAUAAUCUUGUUUC_________________________ .((((((((.....((((((....(((((......)))))(((.....)))..............))))))...(((....)))..)))))))).......................... (-19.40 = -20.78 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:12 2006