Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,903,796 – 5,903,909 |
Length | 113 |
Max. P | 0.979442 |
Location | 5,903,796 – 5,903,909 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.69 |
Mean single sequence MFE | -26.86 |
Consensus MFE | -22.72 |
Energy contribution | -22.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.10 |
Mean z-score | -2.09 |
Structure conservation index | 0.85 |
SVM decision value | 1.84 |
SVM RNA-class probability | 0.979442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5903796 113 - 22224390 AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC ..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06) >DroSec_CAF1 20372 113 - 1 AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC ..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06) >DroSim_CAF1 17740 113 - 1 AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA-------AGAC ..(((((((((.....)))..........((((((((((........((..(..(((((((......)))))))..))).......))))))))))........)))))-------)... ( -25.06) >DroEre_CAF1 20317 112 - 1 AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGCAGCUCGUUGGCUAUGGGAAAGAUUAUGGCGGCGGAAAAGUGUGUCGAGUGGA-UGAUAAUUGCA-------CUAU ...((((((((.....))).........((((((((....((((((((((((((.((((((......)))))))))))....))).)))))).))))-))))..)))))-------.... ( -31.50) >DroYak_CAF1 20746 115 - 1 AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGACGCUGGUU-GCUAUGGGUA----UAUGGCGAAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCAUAUAGCAUAAU ...((((((((.....)))..........(((((((((......(((((..((-((((((....----))))))))......))))))))))))))........)))))........... ( -27.60) >consensus AAUUGCAAUCCGAAUGGGAAAGAUAUAAAUCAUUCGAUAAUCGGGAGCUGGUUGGUUAUGGCAGAGAUUAUGGCUGAGGAAAAGUGUGUCGAAUGGAAAGAUAAUUGCA_______AGAC ...((((((((.....)))..........((((((((((........((..((((((((((......)))))))))))).......))))))))))........)))))........... (-22.72 = -22.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:09 2006