Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,878,265 – 5,878,362 |
Length | 97 |
Max. P | 0.688365 |
Location | 5,878,265 – 5,878,362 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.87 |
Mean single sequence MFE | -27.35 |
Consensus MFE | -12.97 |
Energy contribution | -13.67 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.19 |
Mean z-score | -2.11 |
Structure conservation index | 0.47 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5878265 97 + 22224390 GGUGGUUCCCAUACC-AGUACCAA-----UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((((......)))-...)))..-----.......--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.90) >DroSec_CAF1 83038 91 + 1 GGUGGUUCCCAUACC-AG-----------UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((((......)))-).-----------..))...--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.80) >DroSim_CAF1 85758 91 + 1 GGUGGUUCCCAUACC-AG-----------UCCCAAU--CCCAUUGACUCGC----------AUCC--ACUCG---UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((((......)))-).-----------..))...--......(((((((----------(..(--(((((---.....((((.(....)))))....)))))).))))))))...... ( -25.80) >DroEre_CAF1 81071 97 + 1 GGUGGUUCCCAUGCC-AG-----------UCCCAAG--CCCAUUGACUCGCAGCCACUCGCAUCC--ACUCG---UCUCUCGA----UUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((((......)))-).-----------.))((((--(.....((((((((((.(((((((..(--(.(((---.....)))----..))..))....)))))))))))))))))))). ( -35.60) >DroYak_CAF1 89355 104 + 1 GGUGGUUCCCACACC-AC-----------UUCCAAU--CCCAUUGACUCGCAUCCACUCGCAUCC--ACUCGUCGUCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((((......)))-))-----------)......--......((((((((..((((((.....--(((((........)))))((......))....)))))).))))))))...... ( -30.30) >DroAna_CAF1 87584 112 + 1 GGUUGAUCCAAAUCCUUAUAACAAAAUCCUCGCAAUAUCCUCUCCACUU-C-------AGCAUCACAUCUCGACUCCUCGAGAGUCAUUUGUUUGUUUUCGAGUCCUGCGAGUUGCUUGU ((.....))...........((((....((((((.....(((...((..-.-------((((.....((((((....))))))......)))).))....)))...))))))....)))) ( -20.70) >consensus GGUGGUUCCCAUACC_AG___________UCCCAAU__CCCAUUGACUCGC__________AUCC__ACUCG___UCUCUCGAGUCAUUUGUUUGUUUUCGAGUGCUGCGAGUUGCUUGU ((((.......)))).............................(((((((.................((((........)))).((((((........))))))..)))))))...... (-12.97 = -13.67 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006