Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,866,336 – 5,866,450 |
Length | 114 |
Max. P | 0.854168 |
Location | 5,866,336 – 5,866,450 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.28 |
Mean single sequence MFE | -23.33 |
Consensus MFE | -20.55 |
Energy contribution | -21.33 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -2.30 |
Structure conservation index | 0.88 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.854168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5866336 114 - 22224390 UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGAAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUAAUUUUGUUCAGUUCAAAUGCAAGCCAUAUUAUCCUUAUCGAA ..(((((.....))))).(((((....)))))(((((((((((......(((((((....))))))).......(((((...........)))))..)))))))))))...... ( -25.20) >DroSec_CAF1 71403 109 - 1 UAGAUUAAUUAUUAUUCACCUAUUUUGAUAGAUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUUGU-----UCAAAAGCAACCCAUAUUAUCCUUAUCGGA .......................(((((((...((((((((((......(((((((....)))))))........((((-----......))))...))))))))))))))))) ( -21.00) >DroSim_CAF1 74014 109 - 1 UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUCGU-----UCAAAAGCAACCCAUAUUAUCCUUAUCGAA ..(((((.....)))))((((((....))))))((((((((((......(((((((....)))))))..........((-----......)).....))))))))))....... ( -23.80) >consensus UAGAUUAAUUAUUAAUCACCUAUUUUGAUAGGUAGGGUAGUAUUUCCAUGUCGCAUAUCCAUGCGAUUCUUCAUUUUGU_____UCAAAAGCAACCCAUAUUAUCCUUAUCGAA ..(((((.....)))))......(((((((...((((((((((......(((((((....)))))))......(((((.......))))).......))))))))))))))))) (-20.55 = -21.33 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:37 2006