Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,847,150 – 5,847,247 |
Length | 97 |
Max. P | 0.657512 |
Location | 5,847,150 – 5,847,247 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -21.37 |
Consensus MFE | -18.07 |
Energy contribution | -17.97 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.12 |
Structure conservation index | 0.85 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657512 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5847150 97 + 22224390 UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUACAUACAUAUAUGGAAAGAGAUGCAGU ....((((((((((....)....((((((..((((((((((.........)))))).....)))).))))))........)))).....)))))... ( -21.30) >DroSec_CAF1 52457 93 + 1 UCAAGCAUUCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUCUUUAAGAUAC----AUAUAUAGAACAAGAUGCAGU ....(((((((..(....)))))(((((((((((.((((((.........))))))....))))).))))))----...............)))... ( -21.60) >DroSim_CAF1 55478 93 + 1 UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAUACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUAC----AUAUAUAGAACAAGAUGCAGU ....(((((...((....))...(((((((((((.((((((.........))))))....))))).))))))----.............)))))... ( -21.20) >consensus UCAAGCAUCCCAUGGUGACGGAAGUAUCUAAAGACGUAUCUGCAAGGUAUGGAUACAAAAUGUUUAAGAUAC____AUAUAUAGAACAAGAUGCAGU ....(((((((........))..(((((((((((.((((((.........))))))....))))).)))))).................)))))... (-18.07 = -17.97 + -0.11)
Location | 5,847,150 – 5,847,247 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 93.03 |
Mean single sequence MFE | -20.02 |
Consensus MFE | -15.67 |
Energy contribution | -16.01 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.78 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5847150 97 - 22224390 ACUGCAUCUCUUUCCAUAUAUGUAUGUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA ...(((((((.........(((...((((((...((..((((((.........))))))...))....))))))...)))......))))))).... ( -18.66) >DroSec_CAF1 52457 93 - 1 ACUGCAUCUUGUUCUAUAUAU----GUAUCUUAAAGAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGAAUGCUUGA ...((((..............----((((((.((((((...(((((((.....))..))))))))))))))))).(((((....))))))))).... ( -20.20) >DroSim_CAF1 55478 93 - 1 ACUGCAUCUUGUUCUAUAUAU----GUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUAUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA ...(((((..((((((.((((----((((((....((....(((....)))..)).)))))))))).)))).))..((((....))))))))).... ( -21.20) >consensus ACUGCAUCUUGUUCUAUAUAU____GUAUCUUAAACAUUUUGUAUCCAUACCUUGCAGAUACGUCUUUAGAUACUUCCGUCACCAUGGGAUGCUUGA ...(((((.................((((((.........((((((((.....))..)))))).....))))))..((((....))))))))).... (-15.67 = -16.01 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:27 2006