Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,808,815 – 5,808,929 |
Length | 114 |
Max. P | 0.654069 |
Location | 5,808,815 – 5,808,929 |
---|---|
Length | 114 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 82.63 |
Mean single sequence MFE | -43.42 |
Consensus MFE | -30.15 |
Energy contribution | -31.32 |
Covariance contribution | 1.17 |
Combinations/Pair | 1.26 |
Mean z-score | -1.86 |
Structure conservation index | 0.69 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5808815 114 + 22224390 GCCACUAGGAGGAGCACCUGAUCUCCACUGGGUUUCAAAAGGUGCAGCUGUAGAAAAGCACCUGGCAGCGAGAACUCCUGGAGGGGCUCAAAGCUCACCUGUGUGGCUGGAUCU (((((((((..((((...(((.((((.(..((((((...((((((............))))))......))))...))..).)))).)))..)))).)))).)))))....... ( -43.10) >DroGri_CAF1 20559 108 + 1 GCCAGCAAGAGCAGGACCUGUUCGGGAUUGGGUUUGAGCAGGUGCAGCUGCUGCAGCUUUGCAGCCAGUGCGAACUCUUGUAUGGGCUCAAAGUGCAGCUGUAUGCC------A ....(((..(((.(.(((((((((((......))))))))))).).)))((((((.(((((.((((.((((((....)))))).)))))))))))))))....))).------. ( -48.50) >DroSec_CAF1 14340 114 + 1 GCCACUAGAAGGAGCACCUGAUCUCCACUGGGUUUCAGAAGGUGCAGCUGUAGGAAAGCACCUGGCAGAGAGAACUCCUGCAGGGGCUCAAAGCUCAGCUGUGUGGCUGGAUCU ((((((((...((((...(((.((((.(((.....))).((((((..(.....)...)))))).((((.((....)))))).)))).)))..))))..))).)))))....... ( -42.40) >DroSim_CAF1 14836 114 + 1 GCCACUAGGAGGAGCACCUGAUCUCCAUUGGGUUUCAGAAGGUGCAGCUGUAGGAAAGCACCUGGCAGCGAAAACUCCUGCAGGGGCUCAAAGCUCAGCUGUGUGGCUGGAUCU (((((.(((((..((((((.....((....)).......)))))).((((((((......))).))))).....)))))((((((((.....))))..)))))))))....... ( -45.50) >DroEre_CAF1 13973 114 + 1 GCCACCAGGAGGAGCACCUGAUCGCCACUGGGUUUCAGAAGGUGCAGCUGAAUGAAACCUCCUGGCAGCGAAAACUCCUGCAGAGGCUCGAAGCUCAGCUGUGUGGCGGGAUCU ((((((((...((((........((((..((((((((...((.....))...))))))))..))))..(((...(((.....)))..)))..))))..))).)))))....... ( -44.50) >DroYak_CAF1 14647 114 + 1 GCCACCAGAAGGAGCACCUGAUCGCCACUGGGUUUCAGAAGGUGCAGCUGAAGGAAAGCUCCUGGUAACGAAAACUCCUGCAAAGGCUCAAAGCUCAGCUGUGUGGCGGGAUCU ((((((((...((((..((((..(((....))).))))....(((((..(.((((....))))(....).....)..)))))..........))))..))).)))))....... ( -36.50) >consensus GCCACCAGGAGGAGCACCUGAUCGCCACUGGGUUUCAGAAGGUGCAGCUGUAGGAAAGCACCUGGCAGCGAAAACUCCUGCAGGGGCUCAAAGCUCAGCUGUGUGGCUGGAUCU (((((((((((..((((((.....((....)).......)))))).((((((((......)))).)))).....))))))...((((.....))))......)))))....... (-30.15 = -31.32 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:13 2006