Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 762,367 – 762,474 |
Length | 107 |
Max. P | 0.521079 |
Location | 762,367 – 762,474 |
---|---|
Length | 107 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.91 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -24.36 |
Energy contribution | -24.15 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.14 |
Mean z-score | -1.53 |
Structure conservation index | 0.80 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 762367 107 - 22224390 AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCAUUCCCUGCCUUUCC-GCUUUUC-CGCUUCUCCGCCCCCUGUGGGCUCUACGGGUUGCUGCCAACAC .......(.(((....(((((((.....)))))))((((((................-((.....-.))......((((.....))))...))))))...))))..... ( -30.10) >DroSec_CAF1 77192 99 - 1 AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCUUUCCCCGCCUUUCC-GGUUUUC---------CGCCCCCUGUGGGCUCUAUGGGUUGCUGCCAACAC .......(.(((....(((((((.....)))))))((((((.....(((((.....(-((....)---------))......)))))....))))))...))))..... ( -30.90) >DroEre_CAF1 92346 99 - 1 AUUCAAAGUGCAUUUACCGCUGGGGCCCCCAGUGGACCCGCCGUUCCCCCACUUUCCCCGCUUUCC---------G-CCCCUUUGGGGUCUACGGGUUUCUGCCAACAC .......(.(((....((((((((...))))))))(((((..(...(((((........((.....---------)-).....))))).)..)))))...))))..... ( -30.62) >consensus AUUCAAAGUGCAUUUACCGCUGGCGCCCCCAGUGGACCCGUCAUUCCCCGCCUUUCC_GGUUUUC_________CGCCCCCUGUGGGCUCUACGGGUUGCUGCCAACAC .......(.(((....(((((((.....)))))))((((((.....(((((...............................)))))....))))))...))))..... (-24.36 = -24.15 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:08 2006