Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,799,708 – 5,799,819 |
Length | 111 |
Max. P | 0.879996 |
Location | 5,799,708 – 5,799,819 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 74.54 |
Mean single sequence MFE | -32.53 |
Consensus MFE | -21.01 |
Energy contribution | -22.82 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.06 |
Mean z-score | -1.79 |
Structure conservation index | 0.65 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.879996 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5799708 111 + 22224390 UCUUUAUGCCACCAGACGGUCAGGGACUCAAGGAAUGGAGUCCGUGACUGCAUAUGGAUCGGUAUACUCCGUAAGUAAAUCCAGUUUGACUUAUCAAGCGAUGUGGCUCUU .......(((((..(.((((((.((((((........)))))).)))))))...((((((((......))).......)))))((((((....))))))...))))).... ( -40.01) >DroSim_CAF1 5400 110 + 1 UCUUUAUGCCACCAGACGGUCAGGGACUCGAGGAAUGGAGUCCGUGACUGCAUAUGGAUCGGUAUACU-CGUAAGUAAAUCCAGUUUGACUUAUCAAGCGAUGUGGCUCUU .......(((((((..((((((.((((((.(....).)))))).))))))....)))(((((..((((-....))))...)).((((((....))))))))).)))).... ( -39.70) >DroEre_CAF1 5120 84 + 1 UCUUUAUGCCACCAGACGGUCAGGGACUCGAGGAAUGGAGUGCGUGACUGCAGGUGGAUCUG--------G-------------------CGAUCAAGCGAUCUGGCUCUU .......((((((.(.((((((.(.((((.(....).)))).).))))))).)))(((((..--------(-------------------(......)))))))))).... ( -30.70) >DroYak_CAF1 5911 95 + 1 UCUUUAUGCCACCAGACGGUCAGGGACUUGAAGAAUGGCGUCCGUGACUGCAGGUAAAUCCC--------G--------UCCAGACCAACUAAUCAAGCAAUCUAAGUCUU ......(((.(((.(.((((((.((((............)))).))))))).))).......--------(--------(....))...........)))........... ( -19.70) >consensus UCUUUAUGCCACCAGACGGUCAGGGACUCGAGGAAUGGAGUCCGUGACUGCAGAUGGAUCGG________G________UCCAGUUUGACUUAUCAAGCGAUCUGGCUCUU ........(((((.(.((((((.((((((........)))))).))))))).)))))...................................................... (-21.01 = -22.82 + 1.81)
Location | 5,799,708 – 5,799,819 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 74.54 |
Mean single sequence MFE | -28.95 |
Consensus MFE | -17.96 |
Energy contribution | -18.65 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.19 |
Mean z-score | -1.55 |
Structure conservation index | 0.62 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.515672 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5799708 111 - 22224390 AAGAGCCACAUCGCUUGAUAAGUCAAACUGGAUUUACUUACGGAGUAUACCGAUCCAUAUGCAGUCACGGACUCCAUUCCUUGAGUCCCUGACCGUCUGGUGGCAUAAAGA ....(((((...((((((....))))..(((((((((((...)))))....))))))...)).((((.((((((........)))))).))))......)))))....... ( -33.50) >DroSim_CAF1 5400 110 - 1 AAGAGCCACAUCGCUUGAUAAGUCAAACUGGAUUUACUUACG-AGUAUACCGAUCCAUAUGCAGUCACGGACUCCAUUCCUCGAGUCCCUGACCGUCUGGUGGCAUAAAGA ....(((((...((((((....))))..((((((((((....-))))....))))))...)).((((.((((((........)))))).))))......)))))....... ( -33.40) >DroEre_CAF1 5120 84 - 1 AAGAGCCAGAUCGCUUGAUCG-------------------C--------CAGAUCCACCUGCAGUCACGCACUCCAUUCCUCGAGUCCCUGACCGUCUGGUGGCAUAAAGA ....(((.((((....))))(-------------------(--------(((((.........((((.(.((((........)))).).)))).))))))))))....... ( -23.60) >DroYak_CAF1 5911 95 - 1 AAGACUUAGAUUGCUUGAUUAGUUGGUCUGGA--------C--------GGGAUUUACCUGCAGUCACGGACGCCAUUCUUCAAGUCCCUGACCGUCUGGUGGCAUAAAGA ....(((....((((..(((((.(((((.(((--------(--------((......)).((.(((...)))))..........))))..))))).)))))))))..))). ( -25.30) >consensus AAGAGCCACAUCGCUUGAUAAGUCAAACUGGA________C________CCGAUCCACAUGCAGUCACGGACUCCAUUCCUCGAGUCCCUGACCGUCUGGUGGCAUAAAGA ..((((......))))......................................(((((.((.((((.((((((........)))))).)))).).).)))))........ (-17.96 = -18.65 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:05 2006