Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,792,272 – 5,792,392 |
Length | 120 |
Max. P | 0.957524 |
Location | 5,792,272 – 5,792,392 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -21.27 |
Energy contribution | -22.94 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.10 |
Mean z-score | -2.20 |
Structure conservation index | 0.68 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5792272 120 + 22224390 GGAACAGUAUGCUUCUUCUGAAGAUGAGGAUGCUUCUUCUAAAGAUGCGUAUACUUCUUCUAAAUAUGAGGAUGCUUCUUCUAAAGAUGAGGAUGCUUCUUCUAAAGAUGAUGAUGCCUC ((....((((((.((((..(((((.(......).)))))..)))).))))))...((.((.......(((((.((.(((((.......))))).)).))))).......)).))..)).. ( -31.64) >DroSec_CAF1 8397 99 + 1 GGAACAGUAUGCUUUUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGA---------------------UGAAUA .......(((.(((...((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..))).)---------------------)).... ( -25.54) >DroSim_CAF1 9605 120 + 1 GGAACAGUAUGCUUCUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGAUGCUGCUUCUAAAUAUGACGAUGACUA ((((((((((.((((..((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..)))))))))).))))................. ( -36.04) >consensus GGAACAGUAUGCUUCUUCUAUAGAUGAGGAUGCUUCUUCUGAAGAUGAGGAUAGUUCUUCUAAUGAUGAAGAUGCUCCUUCUAAAGUUGAGGAUGCU_CUUCUAAA_AUGA_GAUGACUA .....(((((.((((..((.((((..((((.((.(((((.......(((((....))))).......))))).)))))))))).))..)))))))))....................... (-21.27 = -22.94 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:02 2006