Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,735,763 – 5,735,861 |
Length | 98 |
Max. P | 0.877087 |
Location | 5,735,763 – 5,735,861 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 81.99 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -16.33 |
Energy contribution | -17.25 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -2.51 |
Structure conservation index | 0.54 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5735763 98 + 22224390 CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGUUUUGCCGUUUUCAUGCGAACAAACGUACGGACGGACG--------GACAACAAAAACAAUUUUUGCCAUUUG------------ ...((......)).......((((((((((((((((..((((......(((......)))))))..)))))--------))))).............))))))...------------ ( -24.71) >DroSec_CAF1 8820 102 + 1 CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGCACAAACG----GACGGACG--------GACAAC---AACGAAUUUUGCCAUUUGAAAUGCAAGGGA (((...(((((.((......((((((((((((((-(((((((((..........)))))----).))))))--------))))).---.........)))))).)))))))...))). ( -32.80) >DroSim_CAF1 9420 95 + 1 CCCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGAACAAACG----GACGGA---------------C---AACGAAUUUUGCCAUUUGAAAUGCAAGGGA (((...(((((.((......((((((..((((((-(((.(((......)))..))))))----)))(..---------------.---..)......)))))).)))))))...))). ( -30.70) >DroEre_CAF1 9188 110 + 1 CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU-UUGCCGUUUUCAUGUGAACAAACG----GACGGACAAACGAACGGACAAC---AGCGAAUUGUGCCAUUUGAAAUGCACGGGA ((((..(((((.((......((((((((((((((-(((((((((...((....))...)----))))).....))))))))))..---........))))))).)))))))..)))). ( -34.40) >DroYak_CAF1 10174 102 + 1 CUCGAUCAUUUUCAUCUUUUAUGGCAUUGUCCGU-UUGCCGUUUUCAUGCGAACAAACG----GACGGACAAA--------CAAC---AACGAAUUGUGCCAUUUAAAAUGCAAGGUA .......((((((((.((..(((((.((((((((-(((.(((......)))..))))))----))))).....--------..((---((....)))))))))..)).))).))))). ( -27.90) >consensus CUCGAUCAUUUUCAUCUUUUGUGGCAUUGUCCGU_UUGCCGUUUUCAUGCGAACAAACG____GACGGACA________GACAAC___AACGAAUUUUGCCAUUUGAAAUGCAAGGGA ............(((.((..((((((.(((((((.....(((((((....))..))))).....)))))))..........................))))))..)).)))....... (-16.33 = -17.25 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:39 2006