Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,722,975 – 5,723,073 |
Length | 98 |
Max. P | 0.636278 |
Location | 5,722,975 – 5,723,073 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -28.29 |
Consensus MFE | -21.09 |
Energy contribution | -22.01 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.15 |
Mean z-score | -1.14 |
Structure conservation index | 0.75 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636278 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5722975 98 - 22224390 GUUAAAACAAACACU--UUUGCUCAUGAUUACAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUU .........(((.((--.(((.((((.....((((((((..(((....)))..((((...))))..........))))))))...)))).))).)).------))) ( -25.10) >DroSec_CAF1 141 98 - 1 GUUAAAACAAAAACU--UUUGUUUAUGAUUGCAGGCUGGCACACCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG .............((--.((((((((....(((((((((........(.(((........))).).........)))))))))..)))))))).)).------... ( -28.13) >DroSim_CAF1 7392 98 - 1 GUUAAAACAAAAACU--UUUGUUUAUGAUUGCAGGCUGGCACACCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG .............((--.((((((((....(((((((((........(.(((........))).).........)))))))))..)))))))).)).------... ( -28.13) >DroEre_CAF1 4533 81 - 1 GC-------------------UUUACGAUUGCAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUCUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG ((-------------------(.....((((((((((((.......((((((..(((...))))))))).....)))))))).)))).......)))------... ( -26.40) >DroYak_CAF1 4387 92 - 1 GAUACA---AAA-----UUUGUUUAUGAAUGCAGGCUGGCACUCCCUGGGGCUCGACGAUGUCCCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC------GUG ......---...-----.((((((((....(((((((((........(((((........))))).........)))))))))..))))))))....------... ( -32.03) >DroAna_CAF1 3978 92 - 1 -----------AACUUCUCUGUUU---AUUUUAGGCUGGGACCCCGUGGGGCUCUACCAUGUCCCUGUACUCAUCCAGUCUGCCGAUGAACAAUGGCGUAAGCGUG -----------........(((((---(((.(((((((((.......(((((........)))))........)))))))))..))))))))...((....))... ( -29.96) >consensus GUUAAA___AAAACU__UUUGUUUAUGAUUGCAGGCUGGCACUCCCUGGGGCUCGACAAUGUCGCUGUAUUCCUCCAGCCUGCCGAUGAACAAUGGC______GUG ...................(((((((....(((((((((........(.(((........))).).........)))))))))..))))))).............. (-21.09 = -22.01 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:24 2006