Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,618,932 – 5,619,052 |
Length | 120 |
Max. P | 0.862039 |
Location | 5,618,932 – 5,619,052 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.94 |
Mean single sequence MFE | -37.40 |
Consensus MFE | -26.39 |
Energy contribution | -25.95 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.18 |
Structure conservation index | 0.71 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.862039 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5618932 120 - 22224390 CAAAGGGCAAGGACAAGGGUGAAGGUCAGAGGCAGAGCAGAGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCAUUGGCAAAUCCAGAUGGCUACCAGUACUCCCGCCAGA .....(((..(((...((((....(((((.(((((.(.((.((.((.....((((((...)))))).)).)).)).)))))).)))))..))))...(((...)))....))).)))... ( -38.10) >DroVir_CAF1 13556 90 - 1 ------------------------------AGCAGGGUGAGGCGGAUAAAGCAAUGCGUCACAUCGAUUGGUACUUUCUGCCAUUGGCUAAUCCCGAUGGCUAUCAGUACUCUCGACUCA ------------------------------......((((.(((..........))).)))).((((..((((((....((((((((......))))))))....)))))).)))).... ( -31.20) >DroPse_CAF1 48891 90 - 1 ------------------------------AGCACGGCAAGCUGGAGAAGUUGAUGCGCCGCAUCGACUGGUACUUCCUGCCGCUGGCCAAUCCCGACGGCUACCAGUACUCCCGGCAGA ------------------------------..........(((((.(((((((((((...))))))))).(((((....((((.(((......))).))))....))))))))))))... ( -35.30) >DroEre_CAF1 8615 108 - 1 ------------CCCAGGAUGAGGGUCAGAGGCAGGGCAGGGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCGCUGGCAAAUCCAGAUGGCUACCAGUACUCCCGCCACA ------------....((((....(((((.(((((((.((..(.((.....((((((...)))))).)).)..))))))))).)))))..))))...((((.............)))).. ( -41.92) >DroYak_CAF1 8698 108 - 1 ------------CGAAGGGUGGGGGUCAGAGGCAGAGCAGGGCGGAGAGGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCACUGGCAAAUCCCGAUGGCUACCAGUACUCCCGCCACA ------------.....(((((((((....(((((.(.((..(.((.....((((((...)))))).)).)..)).))))))(((((.....((....))...))))))))))))))... ( -42.60) >DroPer_CAF1 55767 90 - 1 ------------------------------AGCACGGCAAGCUGGAGAAGUUGAUGCGUCGCAUCGACUGGUACUUCCUGCCGCUGGCCAAUCCCGACGGCUACCAGUACUCCCGGCAGA ------------------------------..........(((((.(((((((((((...))))))))).(((((....((((.(((......))).))))....))))))))))))... ( -35.30) >consensus ______________________________AGCAGGGCAAGGCGGAGAAGGCGAUGCGCCGCAUCGAUUGGUACUUCCUGCCACUGGCAAAUCCCGAUGGCUACCAGUACUCCCGCCACA ........................................(((((((....((((((...))))))(((((((......((((.(((......))).))))))))))).))).))))... (-26.39 = -25.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:59 2006