Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,608,534 – 5,608,645 |
Length | 111 |
Max. P | 0.656361 |
Location | 5,608,534 – 5,608,645 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 92.48 |
Mean single sequence MFE | -28.42 |
Consensus MFE | -24.34 |
Energy contribution | -24.18 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.09 |
Mean z-score | -1.31 |
Structure conservation index | 0.86 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.656361 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5608534 111 - 22224390 U-UUUUCUGCCUCUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC (-(((((.(((((((.((..(((((.(((....)))..))))-----)...)).))))..((((......((((((....))))))......))))..........))).)))))). ( -27.40) >DroSec_CAF1 10214 111 - 1 U-UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC .-..((((.((.........(((((.(((....)))..))))-----)..((((.((((.((((......((((((....))))))......))))..))))....)))))))))). ( -26.20) >DroSim_CAF1 11940 111 - 1 U-UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC .-..((((.((.........(((((.(((....)))..))))-----)..((((.((((.((((......((((((....))))))......))))..))))....)))))))))). ( -26.20) >DroEre_CAF1 10649 112 - 1 U-UUCUCUGCCUUUGUGUAAGUUCAUUUGCAUGCAAUUUGAAUGUAGUCGAGUCGAGAUCGGAGCUCUUCGAUGUUCUCGGAUCUCCAUAUUCUGUAU----AUAAGGCUGGGGAAC (-(((((.(((((.(((((.(((((.(((....)))..)))))......((((.((((((.(((..(......)..))).))))))...))))..)))----))))))).)))))). ( -34.30) >DroYak_CAF1 10787 108 - 1 UUUUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA-----UCGAGUCGAGAUCGAAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAU----UUAAGGCUGGAGAAC .((((((.(((((...(((.(((((.(((....)))..))))-----).((..((((((((((....)))))...)))))..))...........)))----..))))).)))))). ( -28.00) >consensus U_UUUUCUGCCUUUCUGUAAGUUCAUUUGCAUGCAAUUUGAA_____UCGAGCCGAGAUCGCAGCUCUUCGAGGUUCUCGGAUCUCCAUAUUCUGUAUAUCUAUAAGGCUGGAGAAC ..(((((((((((...(((((....)))))(((((..............((((((....))..))))...((((((....)))))).......)))))......))))).)))))). (-24.34 = -24.18 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006