Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,591,815 – 5,591,933 |
Length | 118 |
Max. P | 0.956716 |
Location | 5,591,815 – 5,591,933 |
---|---|
Length | 118 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.17 |
Mean single sequence MFE | -21.97 |
Consensus MFE | -15.02 |
Energy contribution | -16.47 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.07 |
Mean z-score | -2.20 |
Structure conservation index | 0.68 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956716 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5591815 118 + 22224390 AAAUGUGUGGACAUAUUUUAAAAGUGCGAUUCUAAGGAUCGCAUGGUUAAUAUUUUAGAUCUAAAUUUUCUAUCUCAAAAAAA--AAAAAAAUGGUACAACAUUCAUACACAACUACACC ....((((((.......((((..((((((((.....))))))))..)))).....((((.........))))...........--.....((((......)))).........)))))). ( -21.90) >DroSim_CAF1 241 120 + 1 AAAUGUGUGGUCGUAUGUAAAAAGUGCGAUUCUAAGGAUCGUAUGGUUAAUAUUUUAGUUUUAUAUUUUCUCUCUCAAAAAAAAAAAAAAAAUGGCACAACAUUCAUACACAACUACACC ....(((((((.((((((((...((((((((.....))))))))..))).........................................((((......)))))))))...))))))). ( -22.40) >DroYak_CAF1 241 105 + 1 AAAUGUGUGGUCGUGUCUUAAAAUUUCGAUUAUAAGGAUCGCAUAGUUAAUACUUUAAAU-------UUCUCU--------AAGAAAAAAAAUGGGACAACACUCACACAUAACUACACC ..(((((((((..(((((((.((((.(((((.....)))))...))))...........(-------(((...--------..)))).....)))))))..)).)))))))......... ( -21.60) >consensus AAAUGUGUGGUCGUAUCUUAAAAGUGCGAUUCUAAGGAUCGCAUGGUUAAUAUUUUAGAU_UA_AUUUUCUCUCUCAAAAAAA_AAAAAAAAUGGCACAACAUUCAUACACAACUACACC ....(((((((.((((.((((..((((((((.....))))))))..))))........................................((((......)))).))))...))))))). (-15.02 = -16.47 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:39 2006