Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,526,928 – 5,527,019 |
Length | 91 |
Max. P | 0.861345 |
Location | 5,526,928 – 5,527,019 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 76.04 |
Mean single sequence MFE | -31.68 |
Consensus MFE | -23.26 |
Energy contribution | -23.68 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.23 |
Mean z-score | -1.26 |
Structure conservation index | 0.73 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5526928 91 + 22224390 GCAUGGGUCUCAGCGAGAUGUUGGCCAGGCUGAACCGCAGCCUGGAGCAGCAGGUGCGACAGGUGGG--CUAACUAACUAACUUUCCUA-------ACAC ((((..(((((...)))))((((.((((((((.....))))))))..))))..))))...(((..((--.((......)).))..))).-------.... ( -31.20) >DroSec_CAF1 16810 88 + 1 GCAUGGGUCUCAGCGAGAUGCUGGCCAGGCUGAACCGUAGCUUGGAGCAGCAGGUGCGACAGGUGGGUGUUAACUA-----GUUUCCUA-------ACAC .(((..(((...(((...(((((.((((((((.....))))))))..)))))..))))))..))).((((((....-----......))-------)))) ( -30.20) >DroSim_CAF1 19348 88 + 1 GCAUGGGUCUCAGCGAGAUGCUGGCCAGGCUGAACCGCAGCUUGGAGCAGCAGGUGCGACAGGUGGGGGCUAACUA-----GUUUCCUA-------ACAC ((((..(((((...)))))((((.((((((((.....))))))))..))))..))))....(..((..(((....)-----))..))..-------.).. ( -35.40) >DroEre_CAF1 17070 93 + 1 GCAUAGGUCUCAGCGAGAUGAUGGCCAGGCUGAAUCGCAGCCUGGAGCAGCAGGUCCGACAGGUGGG--CUAACUG-----AUCGCCUGGCAGUGUGUAU (((((.(((...((((........((((((((.....))))))))..(((..((((((.....))))--))..)))-----.))))..)))..))))).. ( -36.70) >DroYak_CAF1 17156 75 + 1 GCAUCGGUCUCAGCGAGAUGCUGGCCAGGCUGAAUCGCAGCUUGGAGCAGCAGGUGCGACAGGUGGG--UUAUC-----------------------GAU .((((.(((...(((...(((((.((((((((.....))))))))..)))))..)))))).))))..--.....-----------------------... ( -31.10) >DroAna_CAF1 17357 85 + 1 GCAUGGGCCUCAGCGAGAUGCUGGCCAGGCUGAAUCGGAGUCUGAAAAGGCAUGUGAGACACGUGAGUUCUGGGAA-----AUAUCCUU----------C ((...((((..(((.....)))))))..))......(((((((....)))).(.(.(((.((....))))).).).-----...)))..----------. ( -25.50) >consensus GCAUGGGUCUCAGCGAGAUGCUGGCCAGGCUGAACCGCAGCCUGGAGCAGCAGGUGCGACAGGUGGG__CUAACUA_____AUUUCCUA_______ACAC .(((..(((...(((...(((((.((((((((.....))))))))..)))))..))))))..)))................................... (-23.26 = -23.68 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:14 2006