Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,526,332 – 5,526,425 |
Length | 93 |
Max. P | 0.660830 |
Location | 5,526,332 – 5,526,425 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 79.71 |
Mean single sequence MFE | -34.13 |
Consensus MFE | -26.24 |
Energy contribution | -26.80 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.19 |
Mean z-score | -1.19 |
Structure conservation index | 0.77 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5526332 93 + 22224390 CGUCGGUGGAUCUGGCCUUCAGCAUUCGCCGUGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCUUUUCUUCGC ((((((((((((((.....))).)))))))((.(.(((((((.(((((.......))))).))))))).).)).....))))........... ( -37.70) >DroSec_CAF1 16219 91 + 1 CGUCGGUGGAUCUGGCCUUCAGCAUCCGCCGGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUGAAAUGAUGCAGUU--GGGC ((((((((((((((.....))).)))))))...(.(((((((.(((((.......))))).))))))).))))).............--.... ( -40.30) >DroSim_CAF1 18758 91 + 1 CGUCGGUGGAUCUGGCCUUCAGCAUCCGCCGGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUAGGUGAGAUUUAAUGAUGCAGUG--GGGC ..((((((((((((.....))).)))))))))..(.(((((.(((..(.....)..)))..((((.((........))..)))))))--)).) ( -35.20) >DroEre_CAF1 16490 91 + 1 CCACGGUGGACCUGGCCUUCAGCAUCCACAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUAAGAUGAAAUGCUGCGCAU--ACGC .(((.(((((.(((.....)))..)))))...)))(((((((.(((((.......))))).)))))))........((((...))))--.... ( -34.50) >DroYak_CAF1 16560 91 + 1 CGUCGGUGGAUCUGGGCUUCAGCAUCCGCAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCACAC--UCGC ((((((((((((((.....))).))))))((..(.(((((((.(((((.......))))).))))))).)..))...))))).....--.... ( -36.20) >DroAna_CAF1 16773 84 + 1 CCACCCUGGACCUGAUGUUCAGCAUUCGGAAAGUGUCCCACGGUGGCCUGGAUGUACGAAGUGUGGGUGAGUCUUAGUCCU---------UAC .((((((((((.....)))))((((((((.....((((....).))))))))))).........)))))............---------... ( -20.90) >consensus CGUCGGUGGAUCUGGCCUUCAGCAUCCGCAAGGUGGCCCACAGUGUGCUGGAUGUGCGCAGUGUGGGUGAGAUUAAAUGAUGCACUU__GCGC .....(((((((((.....))).))))))......(((((((.(((((.......))))).)))))))......................... (-26.24 = -26.80 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:13 2006