Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,521,586 – 5,521,685 |
Length | 99 |
Max. P | 0.999597 |
Location | 5,521,586 – 5,521,685 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -29.75 |
Consensus MFE | -19.55 |
Energy contribution | -19.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.15 |
Mean z-score | -3.14 |
Structure conservation index | 0.66 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5521586 99 + 22224390 GGACAGGAACAUGAGAGACGCCUGUUAUGCGCAAUUAAAAAUUUGG-GUUUAAUUGCUGUGGAAACUGUUGUUGGUGGCAUCUUAAGUUCCUGUUUAACA ((((((((((.(((((..((((......(((((((((((.......-.)))))))))...(....).))....))))...))))).)))))))))).... ( -34.80) >DroSec_CAF1 11664 80 + 1 GGACAGGAACAUGAAAGACGCCUGUUAUGCGCAAUUAAAAAU-----------------UGGAAACUG---UUGGUGGCAUCUUAAGUUCCUGUUUAACA ((((((((((....((((.((((((.....)))......(((-----------------.(....).)---))...))).))))..)))))))))).... ( -22.10) >DroEre_CAF1 11796 95 + 1 AGACAGGAACAUGAAGCACGCCUGUUAUGUGCAAUUAAACAUUCGGU--UUAAUUGCUGUGGAAACU---GUUGGUGGCAUCUAAAGUUCCUGUUCAACA .(((((((((..((.((.((((........((((((((((.....))--))))))))...(....).---...)))))).))....)))))))))..... ( -33.80) >DroYak_CAF1 11721 100 + 1 AGACAGGAACAUGAAAGGCGCCUGUUAUGUGCAAUUACAAAUUCGGUGGUUAAUUGCUGUGGCAACUAAAGUCGGUGGCAUCUUAAGUUCCUGUUCAACA .(((((((((....(((..((((((((((.(((((((.............))))))))))))))(((......))))))..)))..)))))))))..... ( -28.32) >consensus AGACAGGAACAUGAAAGACGCCUGUUAUGCGCAAUUAAAAAUUCGG___UUAAUUGCUGUGGAAACUG__GUUGGUGGCAUCUUAAGUUCCUGUUCAACA .(((((((((....((((.((((((.....)))...........................(....)..........))).))))..)))))))))..... (-19.55 = -19.55 + 0.00)
Location | 5,521,586 – 5,521,685 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 80.84 |
Mean single sequence MFE | -27.41 |
Consensus MFE | -19.23 |
Energy contribution | -22.30 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.04 |
Mean z-score | -4.24 |
Structure conservation index | 0.70 |
SVM decision value | 3.77 |
SVM RNA-class probability | 0.999597 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5521586 99 - 22224390 UGUUAAACAGGAACUUAAGAUGCCACCAACAACAGUUUCCACAGCAAUUAAAC-CCAAAUUUUUAAUUGCGCAUAACAGGCGUCUCUCAUGUUCCUGUCC ......((((((((...(((((((...(((....)))......(((((((((.-.......)))))))))........))))))).....)))))))).. ( -30.00) >DroSec_CAF1 11664 80 - 1 UGUUAAACAGGAACUUAAGAUGCCACCAA---CAGUUUCCA-----------------AUUUUUAAUUGCGCAUAACAGGCGUCUUUCAUGUUCCUGUCC ......((((((((..((((((((.....---(((((....-----------------......))))).(.....).))))))))....)))))))).. ( -22.70) >DroEre_CAF1 11796 95 - 1 UGUUGAACAGGAACUUUAGAUGCCACCAAC---AGUUUCCACAGCAAUUAA--ACCGAAUGUUUAAUUGCACAUAACAGGCGUGCUUCAUGUUCCUGUCU ......((((((((...(((((((......---.((....)).((((((((--((.....))))))))))........))))).))....)))))))).. ( -30.00) >DroYak_CAF1 11721 100 - 1 UGUUGAACAGGAACUUAAGAUGCCACCGACUUUAGUUGCCACAGCAAUUAACCACCGAAUUUGUAAUUGCACAUAACAGGCGCCUUUCAUGUUCCUGUCU ......((((((((..(((.((((..((((....)))).....(((((((.............)))))))........)))).)))....)))))))).. ( -26.92) >consensus UGUUAAACAGGAACUUAAGAUGCCACCAAC__CAGUUUCCACAGCAAUUAA___CCGAAUUUUUAAUUGCACAUAACAGGCGUCUUUCAUGUUCCUGUCC ......((((((((..((((((((...(((....)))......(((((((.............)))))))........))))))))....)))))))).. (-19.23 = -22.30 + 3.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:10 2006