Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,502,632 – 5,502,745 |
Length | 113 |
Max. P | 0.999010 |
Location | 5,502,632 – 5,502,745 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.16 |
Mean single sequence MFE | -33.08 |
Consensus MFE | -13.10 |
Energy contribution | -12.98 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.13 |
Mean z-score | -3.03 |
Structure conservation index | 0.40 |
SVM decision value | 3.33 |
SVM RNA-class probability | 0.999010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5502632 113 + 22224390 AACUGUAUUAGCUUGCUUAGUGAGCAAAUGGCGAACACAGGGUAAAACUAGAUAUUACCACCACCAAAUCCAACAAUGU----G---UGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ..........(((..(...)..)))....((((...(((((((((.........))))).................(((----(---((((((.....)))))))))))))).))))... ( -34.00) >DroSec_CAF1 27158 115 + 1 AACUGUAUUAGCUGGUAUAGUGAGCAAAUGGCGAACAUAGGGUAAAACUAGAUAUUGCCACCAU-AAAUCCAGCAAUGU----GCGGUGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ....((((..(((((....(((.(....((((((...(((.......)))....))))))))))-....)))))...((----(((.((((((.....))))))))))).))))...... ( -35.80) >DroSim_CAF1 20622 112 + 1 AUCUGUAUUUGCUUGUUUAGUGAGCAAAUUGCGAACAUAGGGUAAAACUAGAUAUUGCCACCAU-UAAUCCAGCAAUGU----G---UGCCAUUCAUAAUGGCGCGCACUGUACGCCCGA ...((((((((((..(...)..)))))).))))......((((.......(((..((....)).-..)))..(((.(((----(---((((((.....)))))))))).)))..)))).. ( -31.80) >DroEre_CAF1 38034 107 + 1 AAUUAUAUUGGCUUGUCCAGUGAGCCA-GCGCAGGCGAAGUGCAUAACUU-------UCGUUAU-AAAUC----CACAUAAAUCCAAAGCCAUACACAAUGGCACGCACUGUAGCGCCGA .......((((((..(...)..)))))-)....((((.((((((((((..-------..)))))-.....----..............(((((.....)))))..)))))....)))).. ( -33.00) >DroYak_CAF1 29103 87 + 1 AAAUGUAUUGGCUUGUAUGGUGAGCUA-UAGCAAAUGAAAGGCGAAAGC-------------------------AAUGU-------GUGCCAUACACAAUGGCACGCACUGUACCGCUGA ...(((..(((((..(...)..)))))-..))).......((((...((-------------------------(.(((-------(((((((.....)))))))))).)))..)))).. ( -30.80) >consensus AACUGUAUUAGCUUGUAUAGUGAGCAAAUGGCGAACAAAGGGUAAAACUAGAUAUU_CCACCAU_AAAUCCA_CAAUGU____G___UGCCAUACAUAAUGGCGCGCACUGUACGCCCGA ....((((..((.......((..((.....))..))....................................................(((((.....)))))..))...))))...... (-13.10 = -12.98 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:56 2006