Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,500,636 – 5,500,727 |
Length | 91 |
Max. P | 0.979185 |
Location | 5,500,636 – 5,500,727 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 71.76 |
Mean single sequence MFE | -30.37 |
Consensus MFE | -12.56 |
Energy contribution | -13.04 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.40 |
Mean z-score | -2.40 |
Structure conservation index | 0.41 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979185 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5500636 91 + 22224390 GCUGUCCGUUCCGCUCGCCUUCGUUGCCGAUUUACUCGGCGAUGCUGGUGUGCAAAGGACACGCUUUCGAUUAAAUAAUCCACUUAAUUU---------A (((((((.....((.((((..(((((((((.....)))))))))..)))).))...))))).))....((((....))))..........---------. ( -33.40) >DroSec_CAF1 25193 91 + 1 GCUGUCCGUUCCACUCGCCUUCGUUGCCGAUUUAUUCGGCGAAGCUGGUGUGGAAAGGUCACGCUUUCGAUUAAUGAAUCCACUUACUUU---------A ((((.((.((((((..(((....(((((((.....)))))))....))))))))).)).)).))....((((....))))..........---------. ( -30.30) >DroSim_CAF1 18648 91 + 1 GCUGUCCGUUCCACUCGCCUUCGUUGCCGAUUUAUUCGGCGAAGCUGGUGUGCAAAGGACACGCUUUCGAUUAAUGAAUCCACUUACUUU---------A (((((((....(((..(((....(((((((.....)))))))....))))))....))))).))....((((....))))..........---------. ( -27.50) >DroEre_CAF1 35977 96 + 1 GCUGUCCGUACCGCUCGCCUUUGUUGCCGAUUUAUUCGGCGAAGUUGCUGUGCGGAGGACAAGGUCUCGUCUGACUAAUCCACUUUCAUU----GUUACA ..(((((...((((.(((.....(((((((.....)))))))....)).).)))).))))).((((......))))..............----...... ( -31.20) >DroYak_CAF1 27068 94 + 1 GCUGUCCGUACCGCUCGCCUUCGUUGCCGAUUUAUUCGGCGAUGUUGCUGUGCGAAGUGCGAGAUUUCGAUUUAAUAAUCCACAU--ACU----GUUCCA (..(((((((((((.(((...(((((((((.....)))))))))..)).).)))..))))).)))..)((((....)))).....--...----...... ( -28.90) >DroMoj_CAF1 33637 94 + 1 GCUGUCCGAGGCGUUCACCUUGGACGUGGUCUUGCUCGGCGAGGUGGCUGUA--AAUGCCAAAG----UUCUCAUCAGUCCACUUUAUUCGAAAGCUGUA (((((((((((......))))))))((((.((.((...))((((((((....--...))))...----.))))...)).))))..........))).... ( -30.90) >consensus GCUGUCCGUUCCGCUCGCCUUCGUUGCCGAUUUAUUCGGCGAAGCUGCUGUGCAAAGGACAAGCUUUCGAUUAAUUAAUCCACUUACUUU_________A ..(((((....(((.........(((((((.....))))))).......)))....)))))....................................... (-12.56 = -13.04 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:53 2006