Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,494,882 – 5,494,972 |
Length | 90 |
Max. P | 0.747871 |
Location | 5,494,882 – 5,494,972 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.94 |
Mean single sequence MFE | -14.30 |
Consensus MFE | -11.24 |
Energy contribution | -11.24 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.70 |
Structure conservation index | 0.79 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5494882 90 + 22224390 UAUGUACGUAAGCCGCUCCGCAUUUGUAUCUAAUUGCAGGCGUGCCCACAAAA------AACGAAGAAAAAAAAACUAAAAACCAAAAGCCAUAAC .......((..((((((..(((.(((....))).))).)))).))..))....------..................................... ( -11.50) >DroSec_CAF1 19652 81 + 1 UAUGUACGUAAGCCGCU-CGCAUUUGUAUCUAAUUGCAGGCGUGCCCACAAA-------AACGA------AAAAACUAACAA-CAAAAGCCAUAAC .......((..(((((.-.(((.(((....))).)))..))).))..))...-------.....------............-............. ( -13.00) >DroSim_CAF1 13137 82 + 1 UAUGUACGUAAGCCGCU-CGCAUUUGUAUCUAAUUGCAGGCGUGCCCACAAAA------AACGA------AAAAACUAACAA-CAAAAGCCAUAAC .......((..(((((.-.(((.(((....))).)))..))).))..))....------.....------............-............. ( -13.00) >DroEre_CAF1 30299 87 + 1 UAUGUACGUAGGCCGCU-CGCAUUUGUAUCGAAUUGCAGGCGUGCCCACAUAAAGAACAAACAA------AAAAUACAACCA-A-AAUCCCAAAAC .......((.((((((.-.(((((((...)))).)))..))).))).))...............------............-.-........... ( -16.90) >DroYak_CAF1 21269 78 + 1 UAUGUACGUAGGCCGCU-CGCAUUUGUAUCUAAUUGCAGGCGUGCCCACA-----ACCAAACAA------AAAAAACAACAA-C-AA---CAAAA- .......((.((((((.-.(((.(((....))).)))..))).))).)).-----.........------............-.-..---.....- ( -17.10) >consensus UAUGUACGUAAGCCGCU_CGCAUUUGUAUCUAAUUGCAGGCGUGCCCACAAAA______AACGA______AAAAACUAACAA_CAAAAGCCAUAAC ..(((..(((.(((((...))...((((......))))))).)))..))).............................................. (-11.24 = -11.24 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:49 2006