Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,490,436 – 5,490,538 |
Length | 102 |
Max. P | 0.919693 |
Location | 5,490,436 – 5,490,538 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -34.57 |
Consensus MFE | -29.65 |
Energy contribution | -29.77 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -3.38 |
Structure conservation index | 0.86 |
SVM decision value | 1.13 |
SVM RNA-class probability | 0.919693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5490436 102 + 22224390 UUCCAUGCUCUUUUUGGCUUUUUGGUCGGUCGGUGGACAGAGCAGCUUCAGCUUCGUAGUUUUUCCAUGCUUUUCCAUGGCCAUUUGCAAGCCAGAAUUGUC ......((...(((((((((...(((.(((((.((((.((((((.....((((....))))......))))))))))))))))))...)))))))))..)). ( -30.50) >DroSec_CAF1 15341 99 + 1 UUCCAUGCUCUUUUUGGCUUGUUGGU-GGUCGGUGGGCA--GCAGCUUCAGCUUCGUAGUUUUUCCAUGCUUUUCCAUGGCCAUUUGCAAGCCAGAAUUGUC ......((...(((((((((((..((-(((((.((((.(--(((.....((((....))))......))))..)))))))))))..)))))))))))..)). ( -36.60) >DroSim_CAF1 8758 99 + 1 UUCCAUGCUCUUUUUGGCUUGUUGGU-GGUCGGUGGGCA--GCAGCUUCAGCUUCGUAGUUUUUCCAUGCUUUUCCAUGGCCAUUUGCAAGCCAGAAUUGUC ......((...(((((((((((..((-(((((.((((.(--(((.....((((....))))......))))..)))))))))))..)))))))))))..)). ( -36.60) >consensus UUCCAUGCUCUUUUUGGCUUGUUGGU_GGUCGGUGGGCA__GCAGCUUCAGCUUCGUAGUUUUUCCAUGCUUUUCCAUGGCCAUUUGCAAGCCAGAAUUGUC ......((...(((((((((((..((.(((((.((((....(((.....((((....))))......)))...)))))))))))..)))))))))))..)). (-29.65 = -29.77 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:48 2006