Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,471,860 – 5,471,961 |
Length | 101 |
Max. P | 0.600298 |
Location | 5,471,860 – 5,471,961 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 82.12 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -14.52 |
Energy contribution | -15.30 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.05 |
Mean z-score | -2.07 |
Structure conservation index | 0.62 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.600298 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5471860 101 + 22224390 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCCGAUACGGAUCCUACGAUUCAGAUCAGAGAUUCAGAUUCAGAUCCAGAUCCAGAUCCAGAUC .((((((((((.((.(.......(((........)))...(((..(((((....)))))..))).).)).))))))))))(((..(((....)))..))). ( -24.50) >DroSec_CAF1 11713 100 + 1 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCACCGGAUACGGAUCCUACGAUCCCGAUCC-CGAUCCCGAUCAAGAUUCAGAUCCAGAUCCAAAUC ....................(((((((...(((.((...((((..(((((....)))))..))))-.(((....)))..)).))).)))))))........ ( -23.40) >DroYak_CAF1 10554 88 + 1 ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCGGAUACGGAUCCUACGAUCCUGAUCC-U------------GAUCCUGAUCCAGAUGUAGAUC .........((((..((...(((((((....((((....((((..(((((....)))))..))))-.------------))))...)))))))))..)))) ( -22.80) >consensus ACUGAAUUUGAUUCGCAAACUUUGGAUAUAUGAUUCCCCGGAUACGGAUCCUACGAUCCAGAUCC_AGAU_C_GAU__AGAUCCAGAUCCAGAUCCAGAUC .(((.(((((..((.........(((........)))..((((..(((((....)))))..))))..............))..))))).)))......... (-14.52 = -15.30 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:41 2006