Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,412,500 – 5,412,614 |
Length | 114 |
Max. P | 0.667879 |
Location | 5,412,500 – 5,412,614 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 94.86 |
Mean single sequence MFE | -33.10 |
Consensus MFE | -31.35 |
Energy contribution | -31.85 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.95 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.667879 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5412500 114 + 22224390 UUUCCCGUAUCACCACUGCCUUC--AGUUGAAGCCACAAAUUGCUGCGGUUUCUGGCUGCAUUUUCCAUUGUUUCACAAAAUGGCGUGGUUUAGGCCACGAAGAAAAGCUAGGCAU ................((((...--....((((((.((......)).))))))(((((.(.....(((((.........)))))((((((....))))))..)...))))))))). ( -31.10) >DroSim_CAF1 19305 111 + 1 UUCCCCGUAUCA---CUGGCUUC--AGUUCAAGCCACAAAUUGCUGCGGUUGCUGGCUGCAUUUUCCAUUGUUUCACAAAAUGGCGUGGUUUAGGCCACGAAGAAAAGCGAGGCAU ....(((((.((---.((((((.--.....)))))).....)).))))).((((.(((.(.....(((((.........)))))((((((....))))))..)...)))..)))). ( -31.80) >DroEre_CAF1 28582 111 + 1 UUCCCCGUAUCA---CUGGCUUC--AGUUGAAGCCACAAAUUGCUGCGGUUUCUGGCUGCAUUUUCCAUUGUUUCACAAAAUGGCGUGGUUUAGGCCACGAAGAAAAGCAAGGCAU ....((......---.(((((((--....)))))))....((((((((((.....))))).....(((((.........)))))((((((....))))))......)))))))... ( -34.20) >DroYak_CAF1 20747 113 + 1 UUCACCGUAUCA---CUGGCUUCACAGUUGAAGCCACAAAUUGCUGCGGUUUCUGGCUGCAUUUUCCAUUGUUUCACAAAAUGGCGUGGUUUAGGCCACGAAGAAAAGCAAGGCAU ...((((((.((---.((((((((....)))))))).....)).))))))...((.((((.(((((((((.........)))).((((((....))))))..))))))).)).)). ( -35.30) >consensus UUCCCCGUAUCA___CUGGCUUC__AGUUGAAGCCACAAAUUGCUGCGGUUUCUGGCUGCAUUUUCCAUUGUUUCACAAAAUGGCGUGGUUUAGGCCACGAAGAAAAGCAAGGCAU ....(((((.((....(((((((......))))))).....)).)))))....((.((((.(((((((((.........)))).((((((....))))))..))))))).)).)). (-31.35 = -31.85 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:23:24 2006