Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,366,105 – 5,366,220 |
Length | 115 |
Max. P | 0.768237 |
Location | 5,366,105 – 5,366,220 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 97.91 |
Mean single sequence MFE | -25.23 |
Consensus MFE | -23.52 |
Energy contribution | -23.20 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.06 |
Mean z-score | -1.34 |
Structure conservation index | 0.93 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768237 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5366105 115 - 22224390 AAUACAAAAACAGAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGACCAAAGAUGCCUUCAUGCCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG ....((((..(((((((((((....)).((((....(((((((((...................)))))))))..)))).)))))))))..(((..............))))))) ( -23.15) >DroSec_CAF1 40741 115 - 1 AAUACAAAAACAGAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGACCAAAGAUGCCUUCAUGCCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG ....((((..(((((((((((....)).((((....(((((((((...................)))))))))..)))).)))))))))..(((..............))))))) ( -23.15) >DroSim_CAF1 38553 115 - 1 AAUACAAAAACAGAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGACCAAAGAUGCCUUCAUGCCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG ....((((..(((((((((((....)).((((....(((((((((...................)))))))))..)))).)))))))))..(((..............))))))) ( -23.15) >DroEre_CAF1 43130 115 - 1 AAUACAAAAACAGAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGGCCGAAGAUGCCUUCAUGCCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG .......((((........((....(((((....((((((.((((((.........)))((((....))))..))).))))))...))))).))....((........)))))). ( -28.30) >DroYak_CAF1 43512 115 - 1 AAUACAAAAACGAAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGGCCGAAGAUGCCUUCAUGUCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG .......((((((((((((((....)).(((((...(((((((((((.........)))......)))))))).))))).)))))))(((..((....))...)))...))))). ( -28.40) >consensus AAUACAAAAACAGAAUAAAGCAACAGCCGAUGAAAGAUGAAGGCGGCAAGAAAACGACCAAAGAUGCCUUCAUGCCAUCAUUUAUUUUGGCCGCAUUAGCAUCCCAAAGCGUUUG ....((((..(((((((((((....)).((((....(((((((((....(........).....)))))))))..)))).)))))))))..(((..............))))))) (-23.52 = -23.20 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:44 2006