Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,310,366 – 5,310,461 |
Length | 95 |
Max. P | 0.730105 |
Location | 5,310,366 – 5,310,461 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.78 |
Mean single sequence MFE | -25.62 |
Consensus MFE | -15.18 |
Energy contribution | -15.10 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.24 |
Mean z-score | -1.86 |
Structure conservation index | 0.59 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5310366 95 - 22224390 CAAUUUAUUAAUAUUUU-CAUGGCAUUUAAGUGCCGUGGGUG--UACUUUCCAUUU----------------------CGUUAAGUGUAAAUAAGCACUGUGAUGUCGUAAACCACACAG ................(-((((((((....)))))))))(((--(..(((.(....----------------------((((((((((......))))).)))))..).)))..)))).. ( -22.40) >DroSec_CAF1 47123 95 - 1 CAAUUUAUUAAUAUUUU-CAUGGCAUUUGAGUGCCGUGGGUG--UACUUUCCAUUU----------------------CGUUAAGUGUAAAUAAGCACUGCGAUGUCGUAAACUACACAG ................(-((((((((....)))))))))(((--((.((((.((.(----------------------(((..(((((......))))))))).)).).))).))))).. ( -26.40) >DroSim_CAF1 38606 95 - 1 CAAUUUAUUAAUAUUUU-CAUGGCAUUUGAGUGCCGUGGGUG--UACUUUCCAUUU----------------------CGUUAAGUGUAAAUAAGCACUGCGAUGUCGUAAACUACACAG ................(-((((((((....)))))))))(((--((.((((.((.(----------------------(((..(((((......))))))))).)).).))).))))).. ( -26.40) >DroEre_CAF1 49786 109 - 1 CAAUUUAUUAAUAUUUU-CAUGGCAUUAAAGUGCUGUGGGUG--UACUUUGCAUUUGAGUGCCAGUAAUCAA--------UUCGUUAUAAAUAAACACUGUGCUGUCGUAAACUACGCAG ...((((((........-..(((((((.((((((...((...--..))..)))))).)))))))(((((...--------...))))).))))))..(((((..((.....))..))))) ( -24.10) >DroYak_CAF1 49550 120 - 1 CAAUUUAUUAAUAUUUUCCAUGGCAUUUCAGUGCCUUGGCUGUAUACUUUGCAUUUGAGUGCCAGUACUUUAGGUGUUCUUUAGGUGUAAAUAAACACUGUGGUGUCGUAAAUCGCGCAG ..........((((...(((.(((((....))))).)))..))))....(((....(((..((.........))..)))....(((((......)))))(((((.......)))))))). ( -28.80) >consensus CAAUUUAUUAAUAUUUU_CAUGGCAUUUAAGUGCCGUGGGUG__UACUUUCCAUUU______________________CGUUAAGUGUAAAUAAGCACUGUGAUGUCGUAAACUACACAG ...((((((.((((((..((((((((....))))))))((..........))..............................)))))).))))))..(((((..((.....))..))))) (-15.18 = -15.10 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:17 2006