Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,308,541 – 5,308,656 |
Length | 115 |
Max. P | 0.840710 |
Location | 5,308,541 – 5,308,656 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.70 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -8.38 |
Energy contribution | -8.54 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.17 |
Mean z-score | -1.90 |
Structure conservation index | 0.31 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5308541 115 + 22224390 ACUGCAGUAAUUUGGGCUGUUCAUUUACAUGGCCCGAUAUAAAUACGC-AAAUUCACUGAGAGCAAUUGCCCCAAAGUGUUCAAUGUUAAUAUAUAAAUUA----UAUGUAGAUUUGUUG .(((((((((((((((((((........))))))).(((((...(((.-.....((((..(.((....)).)...)))).....)))...)))))))))))----).)))))........ ( -24.80) >DroSec_CAF1 45284 111 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA----AAUGCGC-AAAUACACUGAGAGCAAUUGCCGCAAGGUGUUCAAUGUUUGCAUAUAAAUUA----CAUGUAAAUUAGCUG ..((((((((((((((((((......))).))))...----.....((-(((((......((((....(((....)))))))..)))))))....))))))----).))))......... ( -30.10) >DroSim_CAF1 36800 111 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA----AAUGCGC-AAAUACACUGAGAGCAAUUGCCGCAAGGUGUUCAAUGUUUGCAUAUAAAUUA----CAUGUAGAUUAGCUG .(((((((((((((((((((......))).))))...----.....((-(((((......((((....(((....)))))))..)))))))....))))))----).)))))........ ( -33.40) >DroEre_CAF1 48018 98 + 1 ACUGCAGUAAUUUGGGCUGUUAAUUUACAUACCCUGA----AAAAGGCCGGAUACACUGAGAGCAAUUGCAGUGACUAGCGCCAGGUU---------AUUA----CAUUUACA-----CG ..((.((((((((((((((.............(((..----...))).......(((((..(....)..)))))..)))).)))))))---------))).----))......-----.. ( -24.20) >DroYak_CAF1 47789 95 + 1 ACUGCAGUAAUUUGGGCUGUUCAUUUACAUCCCCUGA----ACUACGC-AGCUACACUGAGCGUAAUUGCAGUGAAUGGU------UU---------AAUAAAUUCAUUUUAA-----UA ((((((((.....(((.(((......))).)))....----..(((((-...........)))))))))))))((((((.------..---------.......))))))...-----.. ( -21.90) >consensus ACUGCAGUAAUUUGGGCUGUUAAUUUACAUGCCCUGA____AAUACGC_AAAUACACUGAGAGCAAUUGCCGCAAAGUGUUCAAUGUU___AUAUAAAUUA____CAUGUAAAUU_G_UG ..(((.((((((.(((((((......))).))))............((..............)))))))).))).............................................. ( -8.38 = -8.54 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:13 2006