Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,307,703 – 5,307,823 |
Length | 120 |
Max. P | 0.906495 |
Location | 5,307,703 – 5,307,823 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -27.18 |
Energy contribution | -26.74 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.53 |
Structure conservation index | 0.93 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.906495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5307703 120 + 22224390 AAAAUAAGCAAAAACAAAGGCCAAGUUGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUCGCCGCAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC ..................(((..((((((...........((((((((.....(((.((((((.....))).))).))).)))))))).(((......))).......)))))).))).. ( -30.10) >DroSec_CAF1 44487 120 + 1 AAAAUAAGCAAAAACAAAGGCCAAGCCGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUCGCCGCAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC .......((.........(((...))).....((((....((((((((.....(((.((((((.....))).))).))).)))))))).(((......)))......))))....))... ( -29.80) >DroSim_CAF1 36005 120 + 1 AAAAUAAGCAAAAACAAAGGCCAAGCCGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUCGCCGCAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC .......((.........(((...))).....((((....((((((((.....(((.((((((.....))).))).))).)))))))).(((......)))......))))....))... ( -29.80) >DroEre_CAF1 47244 120 + 1 AAAAUAAGCAAAAACAAAGGCCAAGUUGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUAGCCGCAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC ..................(((..((((((...........((((((((.....((..((((((.....))).)))..)).)))))))).(((......))).......)))))).))).. ( -27.90) >DroYak_CAF1 46964 120 + 1 AAAAUAAGCAAAAACAAAGGCCAAGCCGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUCGCCGUAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC .......((.........(((...))).....((((....((((((((.....(((.((((((.....))).))).))).)))))))).(((......)))......))))....))... ( -27.80) >consensus AAAAUAAGCAAAAACAAAGGCCAAGCCGAAAACGACGAAUUUAUUUGCAACACGCGCCAGUCUGGCCAAGAUCUGUCGCCGCAGAUAAUCCCGCAAAAGGGCAUUUAGUCGACUCGCCAC .......((.........(((...))).....((((....((((((((.....(((.((((((.....))).))).))).)))))))).(((......)))......))))....))... (-27.18 = -26.74 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:12 2006