Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,302,692 – 5,302,808 |
Length | 116 |
Max. P | 0.822570 |
Location | 5,302,692 – 5,302,808 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -24.20 |
Consensus MFE | -13.81 |
Energy contribution | -13.62 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -2.05 |
Structure conservation index | 0.57 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822570 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5302692 116 + 22224390 GUGCUGUUGAGGAGACGAGAAAAGCUUUAAGGCGACUUAAAAGAUGUCUUGAUGAACUGCUAGCUGAAUUAAAUUGUUAUUUAAUUUCUAGAAAUGUUGGUUUUUUUU-UUUUGUUA .......(((.((((.((((((((((((((((((.((....)).))))))))..(((..((((..(((((((((....)))))))))))))....)))))))))))))-)))).))) ( -23.70) >DroSec_CAF1 39469 102 + 1 --GCUGUUGAGGAAACGAGAAAAGCUUUAAGGCGACUUAAAAGAUGUCUCGAUGAACUGCUAG--AAAUU--AUUUUUAUUUAAUUUCUAGAAAUGCAGAUUUUCUUU--------- --......((((((((((((.....((((((....)))))).....))))).....(((((((--(((((--(........))))))))).....)))).))))))).--------- ( -27.10) >DroSim_CAF1 30291 88 + 1 --GCUGUUGAGGAAACGAGAAAAGCUUUAAGGCGACUUAAAAGAUGUCUCGAUGAACUGCUAG--AAAUU--AUUUAUAUUUAAUUUCUAGAAA----------------------- --((.(((.((....)((((.....((((((....)))))).....))))..).))).))(((--(((((--(........)))))))))....----------------------- ( -22.70) >DroYak_CAF1 41380 100 + 1 CUGCUGUUGGGGAAACGAGAAAAGCUUUAAGGCGACUUAAAAGCUGGCUUGAUGAACUGCUAG---------AUUUUUAUUUAAUUUUUAGUAAUGCAGUUGCUCGCAU-------- ((((...........((((...(((((((((....))).))))))..))))......((((((---------(..((.....))..)))))))..))))..........-------- ( -23.30) >consensus __GCUGUUGAGGAAACGAGAAAAGCUUUAAGGCGACUUAAAAGAUGUCUCGAUGAACUGCUAG__AAAUU__AUUUUUAUUUAAUUUCUAGAAAUGCAG_UUUUCUUU_________ ..((.(((.((....)((((.....((((((....)))))).....))))..).))).))......................................................... (-13.81 = -13.62 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:22:01 2006