Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,301,138 – 5,301,229 |
Length | 91 |
Max. P | 0.648238 |
Location | 5,301,138 – 5,301,229 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 91.18 |
Mean single sequence MFE | -25.15 |
Consensus MFE | -21.07 |
Energy contribution | -21.26 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.09 |
Mean z-score | -1.54 |
Structure conservation index | 0.84 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5301138 91 - 22224390 UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGUCAAAUC-----AAAUCCCUCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA .....((((((..(((.(((((....(.((((.(((.(...-.-..).)))...-----.)))).)..))))).)))(((....)))))))))..... ( -23.60) >DroSec_CAF1 37971 91 - 1 UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGCAAAAUC-----AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA .....((((((..(((.(((((.....(((((((((.....-.-)))))..)))-----)........))))).)))(((....)))))))))..... ( -26.02) >DroSim_CAF1 28799 91 - 1 UUCUCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU-C-CAGCAAAAUC-----AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA .....((((((..(((.(((((.....(((((((((.....-.-)))))..)))-----)........))))).)))(((....)))))))))..... ( -26.02) >DroEre_CAF1 39359 97 - 1 UUCCGGAUCUCAUCUGGCGGCGAACUGUGAUUGCUGUCCC-CCACAGGAAAAUCGUACAAAAUCCACCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA ..((((((...))))))....(((((.(((((((((((..-.....(((.............))).......))))))))))....).)))))..... ( -24.96) >consensus UUCCCGAGCUCAUCUGGCGGCGAACUGUGAUUGUUGUCCCU_C_CAGCAAAAUC_____AAAUCCCCCCGCUGGCAGCAAUCUUUUGGAGUUCAUUAA .....((((((.....((((....))))(((((((((.......((((.....................))))))))))))).....))))))..... (-21.07 = -21.26 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:59 2006