Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,290,989 – 5,291,106 |
Length | 117 |
Max. P | 0.935581 |
Location | 5,290,989 – 5,291,106 |
---|---|
Length | 117 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.27 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -16.66 |
Energy contribution | -16.60 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.14 |
Mean z-score | -2.22 |
Structure conservation index | 0.61 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5290989 117 + 22224390 UAAAACAUCGAUGCUGCGCCAAAGUUUAUUGGCUUUUUAUCGC-GUGCCCAAAAAAAAAAAAGAAUUGUAAGUGAAUUAGC-CAGAAAUUCGCAUGCAAUGGAG-CUCGGUGUAUACGGU ....(((((((.(((.((((((......)))))..........-....................((((((.(((((((...-....))))))).))))))).))-))))))))....... ( -31.30) >DroSec_CAF1 28261 98 + 1 UAAAACAUCGAUGCUGCGCCAAAGUUUAUUGGCUUUUUUC--C-CUGGCCAAA----------AAUUGUAAGUGAAUUAAC-CAGAAAUUCGCAUACAAUG-AG-CU------AUGCGAU ................(((...(((((.((((((......--.-..)))))).----------.((((((.(((((((...-....))))))).)))))))-))-))------..))).. ( -24.00) >DroSim_CAF1 19086 98 + 1 UAAAACAUCGAUGCCGGGGCAAAGUUUAUUGGCUUUUUUC--C-CUGGCCAAA----------AAUUGUAAGUGAAUUAAC-CAGAAAUUCGCAUGCAAUG-AG-CU------AUGCGAU ......((((..(((((((.((((((....))))))...)--)-)))))....----------.((((((.(((((((...-....))))))).)))))).-..-..------...)))) ( -29.50) >DroYak_CAF1 29367 102 + 1 UAAAGCAUCGAUGCCACGCCAAAGUUUAUUGGUUUGUUGUUGCUUUUGCCCA-----------AAUUGUAAGUGAAUUUCCACAGAAAAUCGCAUGCAAUG-UGAAU------AUGCGAU ....((((((((..((.(((((......))))).))..))))........((-----------.((((((.((((.((((....)))).)))).)))))).-))...------))))... ( -24.50) >consensus UAAAACAUCGAUGCCGCGCCAAAGUUUAUUGGCUUUUUUC__C_CUGGCCAAA__________AAUUGUAAGUGAAUUAAC_CAGAAAUUCGCAUGCAAUG_AG_CU______AUGCGAU ......((((.......(((((......)))))...............................((((((.(((((((........))))))).))))))................)))) (-16.66 = -16.60 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:49 2006