Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,247,690 – 5,247,793 |
Length | 103 |
Max. P | 0.733071 |
Location | 5,247,690 – 5,247,793 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 98.64 |
Mean single sequence MFE | -14.84 |
Consensus MFE | -14.36 |
Energy contribution | -14.56 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.29 |
Structure conservation index | 0.97 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.733071 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5247690 103 + 22224390 ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAUUAACA .............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20) >DroSec_CAF1 3791 103 + 1 ACCCUUAAACAAGUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA .............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.10) >DroSim_CAF1 3426 103 + 1 ACCCUUAAACAAGUGUGUGUAUACCUAUUUAUAAUAUCGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA .............((((.(((...((((((........(((..((((........))))..)))..(((....))).))))))...))))))).......... ( -13.50) >DroEre_CAF1 3869 103 + 1 ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA .............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20) >DroYak_CAF1 3921 103 + 1 ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA .............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... ( -15.20) >consensus ACCCUUAAACAAAUGUGUGUAUACCUAUUUAUAAUAUUGAAUAUUUAAAUUGAAAUGAACGUUCAAGACUGCUGUCAAAAUAGCUUUAUCACAAUAAAUAACA .............((((.(((...((((((......(((((..((((........))))..)))))(((....))).))))))...))))))).......... (-14.36 = -14.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:12 2006