Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,232,472 – 5,232,582 |
Length | 110 |
Max. P | 0.889934 |
Location | 5,232,472 – 5,232,582 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 97.54 |
Mean single sequence MFE | -20.98 |
Consensus MFE | -20.10 |
Energy contribution | -20.10 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.08 |
Structure conservation index | 0.96 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889934 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5232472 110 - 22224390 GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUAAUAAUACUCCUUUAUCCUCUUUCU ...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)........................... ( -20.10) >DroSec_CAF1 8800 107 - 1 GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA---AUACUCCUUUAUCCUCUUUCU ...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)...---..................... ( -20.10) >DroEre_CAF1 8849 107 - 1 GAAUAAUUAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA---AUACUCCUUUAUCCUCUUUCU .....(((((((...(((.(((((((((......((((..........(((....)))))))....))))))))).))).)).)))---))................... ( -22.00) >DroYak_CAF1 9059 107 - 1 GAAUAAUUAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUU---AUACUCCUUUAUCCUCUUUCU .......((((((..(((.(((((((((......((((..........(((....)))))))....))))))))).)))....)))---))).................. ( -21.70) >consensus GAAUAAUAAUAGUUUGGAUAGUAGUUUUGGCAAUUCGAUUACAACACUUGCUUCGGCAUCGGUUCAAAAACUGCUUUCCUCUCAUA___AUACUCCUUUAUCCUCUUUCU ...........(...(((.(((((((((......((((..........(((....)))))))....))))))))).)))...)........................... (-20.10 = -20.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:21:03 2006