Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,218,641 – 5,218,741 |
Length | 100 |
Max. P | 0.995982 |
Location | 5,218,641 – 5,218,741 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 88.84 |
Mean single sequence MFE | -23.09 |
Consensus MFE | -18.00 |
Energy contribution | -18.68 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.09 |
Mean z-score | -3.23 |
Structure conservation index | 0.78 |
SVM decision value | 2.64 |
SVM RNA-class probability | 0.995982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5218641 100 - 22224390 AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGUUUCCCAGCCCUCGCCUUCACAAUC .(((((...((((((((((((((....)))))))).))))))........((..(.((((..............)))).)..))....)))))....... ( -23.34) >DroSec_CAF1 38518 100 - 1 AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAAUACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC .(((((...((((((((((((((....)))))))).))))))....................((.((.......)).)).........)))))....... ( -22.50) >DroSim_CAF1 32258 100 - 1 AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC .(((((...((((((((((((((....)))))))).))))))....................((.((.......)).)).........)))))....... ( -22.50) >DroEre_CAF1 42132 94 - 1 AGAGGCACUGGAAAUUCCUUGAGCCCCUUCAAGGACAUUGCCUAAUUCUUGGCAGUAAACACGACUCAAAACACGAUUCCC------AGCCUUUACAAUC ((((((...((((..((((((((....)))))))).((((((........))))))....................)))).------.))))))...... ( -27.50) >DroYak_CAF1 39373 90 - 1 -----UCGUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGGCAGCAAACACGACUCUAAACACGAUUCCC-----UUGCCUACACAAUC -----..((((((((((((((((....)))))))).))))))........(((((......((..........))......-----)))))...)).... ( -19.60) >consensus AGAGGCACUGGAAAUUCCUUGAGCCUCUUCAAGGACAUUUCCUAAUUCUUGCCAGUAAACACGACUCAAAACACGAUUCCCAGCCCUCGCCUUCACAAUC .(((((...((((((((((((((....)))))))).))))))....((.((........)).))........................)))))....... (-18.00 = -18.68 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:53 2006