Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,144,719 – 5,144,816 |
Length | 97 |
Max. P | 0.787529 |
Location | 5,144,719 – 5,144,816 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 72.11 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -13.90 |
Energy contribution | -13.57 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.63 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5144719 97 - 22224390 AACCGAACUGCCAGCAAAAAGUUGACAAGGAGUAAAACAAAAAACA----AAAGGGUGACUGAUUAUUCGAUGGUUUGGUCGCCAAGCGGUUAAUUCGAAG ...((((((((((((.....))))......................----....((((((..(............)..))))))..)))))....)))... ( -21.00) >DroSec_CAF1 25989 80 - 1 ---------------UGAAAGUUGGCAAGGAGUAAAACAA--AACC----GCACGGUGACUGAUUAUGCGAUGGUUUGGUCGCCAAGGGGUUAAAUCGAAG ---------------.((..(((.((.....))..)))..--((((----.(..((((((..(............)..))))))..).))))...)).... ( -17.00) >DroYak_CAF1 22570 94 - 1 AA---AACUGCCAGC--AAAGUUGGCAAGGAGCUAAGAAA--GGCGUUAAUCACGGUGACUGAUUAUUCGAUGGCUUGGUCGCCAAGCGGUUAAUUAGAAG ..---...(((((((--...))))))).((((((......--)))..((((((.(....))))))))))(((.((((((...)))))).)))......... ( -28.40) >consensus AA___AACUGCCAGC__AAAGUUGGCAAGGAGUAAAACAA__AACA____ACACGGUGACUGAUUAUUCGAUGGUUUGGUCGCCAAGCGGUUAAUUCGAAG ...................(((((((.....((..........)).........((((((..(............)..)))))).....)))))))..... (-13.90 = -13.57 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:35 2006