Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,142,407 – 5,142,497 |
Length | 90 |
Max. P | 0.678563 |
Location | 5,142,407 – 5,142,497 |
---|---|
Length | 90 |
Sequences | 3 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -28.17 |
Consensus MFE | -21.49 |
Energy contribution | -21.60 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.05 |
Mean z-score | -2.20 |
Structure conservation index | 0.76 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678563 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5142407 90 - 22224390 CUUUUGCUUUCUAUCGAGCC-------AAAAAGGCCGAGCUUCCCAAAUAAAGGGGAGCCCACCAACGUGAUCCCCAUGCGAUUGCUUCGCUUGUUC ...(..(......(((.(((-------.....))))))(((((((.......)))))))........)..)....((.((((.....)))).))... ( -25.70) >DroSec_CAF1 23676 93 - 1 CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA--AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG--GGCUUGUUC ..............((((((....(((.....))).(.((((((..--.....)))))).).((((((((.....))))...))))--))))))... ( -29.40) >DroSim_CAF1 17474 93 - 1 CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA--AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG--GGCUUGUUC ..............((((((....(((.....))).(.((((((..--.....)))))).).((((((((.....))))...))))--))))))... ( -29.40) >consensus CUUUUGCUUUCUAUCGAGCCAAAAGCCAAAAAGGCCGAGCUCCCAA__AAAAGGGGAGCCCACCAACGUGAUACCCAUGCCAUUGG__GGCUUGUUC ..............((((((............((..(.((((((.........)))))))..))..((((.....)))).........))))))... (-21.49 = -21.60 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:34 2006