Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,136,190 – 5,136,302 |
Length | 112 |
Max. P | 0.730699 |
Location | 5,136,190 – 5,136,302 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.75 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -24.24 |
Energy contribution | -24.43 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.10 |
Mean z-score | -1.80 |
Structure conservation index | 0.75 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5136190 112 - 22224390 ------UUUAUU--CCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGAAUUGGCUUGAUUAGGCUGUCAAAACGAUGGACUUUGCGGGCAGCAUUUAAUUUAUUGUUGCCGGGCCAU ------......--.(((...(((((((((.(((...((((((....)))))).((((......)))))))))))))))).........(((((((..........)))))))))).... ( -29.70) >DroSec_CAF1 12415 120 - 1 UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGCCCAU ............((((.((((((.(((((((.((...(((((((.(..(((...((((......)))).)))..).)))))))...)).)))))))..........)))))).))))... ( -34.70) >DroSim_CAF1 12210 120 - 1 UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU ...........((((((((((((.(((((((.((...(((((((.(..(((...((((......)))).)))..).)))))))...)).)))))))..........)))))).)))))). ( -39.60) >DroYak_CAF1 13810 120 - 1 UUUUAUUUUUUUUUUGCCUCAUAUUGUUUUUGGCUUUGUUUACUUGGGUGGAUUGGCUUGAUUAGGCUGUCAAAACUGUGGAGUUCGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU ..............(((.((.......(((((((...(((((.(..(((......)))..).))))).)))))))(((((.....))))))).))).............(((....))). ( -24.80) >consensus UUUUAUUCCAUUGGCCCCUAAUAUUGUUUUCGGCUUUGUUUACUUUGGUGGAUUGGCUUGAUUAGGCUGUCAAAACGGUGGACUUUGCGGGAAGCAUUUAAUUCAUUGUUGGCGGGCCAU ............................((.((((..((((((....)))))).)))).))...((((((((..((((((((...(((.....))).....)))))))))))))).)).. (-24.24 = -24.43 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:32 2006