Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,103,653 – 5,103,749 |
Length | 96 |
Max. P | 0.574827 |
Location | 5,103,653 – 5,103,749 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -23.83 |
Consensus MFE | -17.24 |
Energy contribution | -17.64 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 0.72 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542766 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5103653 96 + 22224390 GAAACACUAUUUCUGU--------UUUUUUAUGCUUUUUGGGCAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGG-GACUUUGGCUCAGUUCCCAUUGUUC ((((((.......)))--------)))...........((((.(((((((((.(((((((..............)))))-).).)))))..))))))))...... ( -24.44) >DroSec_CAF1 14894 96 + 1 GAAACACUACUUCUUU--------CUUUUUAUGCUUUUUGGGCAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGG-GACUUUGGCUCAGUUCCCAUUGUUC ................--------..............((((.(((((((((.(((((((..............)))))-).).)))))..))))))))...... ( -23.14) >DroEre_CAF1 14867 93 + 1 GAAACACUAUUUCU-----------UUUUUAUGCUUUUUGGGCAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGG-GACUUUGGCUGAGUUCCCAUUGUUC ..............-----------.............((((.(((((((((.(((((((..............)))))-).).)))))..))))))))...... ( -23.14) >DroYak_CAF1 14879 93 + 1 GAAACACUAUUUCU-----------UUUUUAUGCUUUUUGGGGAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGG-GAGUUUGGCUCAGUUCCCAUUGUUC ..............-----------...............(((((((((((((.((((((..............)))))-).).)))))..)))))))....... ( -26.24) >DroAna_CAF1 23967 105 + 1 GGGACACUAUUUCUUUUCUCGUUUUUUUUUUUUGUAUUUCGGCAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGGGGACUCUGGCUCAGUUCCCAUUGUGC ((((.(((......................(((((.....(((..........))).)))))..((((..((((.....))))..))))..)))))))....... ( -22.20) >consensus GAAACACUAUUUCU_U_________UUUUUAUGCUUUUUGGGCAACUGUCAACGCCCGCAAAUUGUCAUUGUCCUGCGG_GACUUUGGCUCAGUUCCCAUUGUUC ......................................((((.(((((((((..((((((..............))))).)...)))))..))))))))...... (-17.24 = -17.64 + 0.40)
Location | 5,103,653 – 5,103,749 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 88.92 |
Mean single sequence MFE | -23.54 |
Consensus MFE | -16.72 |
Energy contribution | -16.96 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.82 |
Structure conservation index | 0.71 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574827 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5103653 96 - 22224390 GAACAAUGGGAACUGAGCCAAAGUC-CCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUGCCCAAAAAGCAUAAAAAA--------ACAGAAAUAGUGUUUC ......(((((((((...(((.(.(-(((((((..........))))))))).))).))))).))))..((((((......--------.........)))))). ( -23.86) >DroSec_CAF1 14894 96 - 1 GAACAAUGGGAACUGAGCCAAAGUC-CCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUGCCCAAAAAGCAUAAAAAG--------AAAGAAGUAGUGUUUC ......(((((((((...(((.(.(-(((((((..........))))))))).))).))))).))))..((((((......--------.........)))))). ( -23.86) >DroEre_CAF1 14867 93 - 1 GAACAAUGGGAACUCAGCCAAAGUC-CCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUGCCCAAAAAGCAUAAAAA-----------AGAAAUAGUGUUUC ......((((((((((((....(.(-(((((((..........))))))))))))))..))).))))..((((((.....-----------.......)))))). ( -21.40) >DroYak_CAF1 14879 93 - 1 GAACAAUGGGAACUGAGCCAAACUC-CCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUCCCCAAAAAGCAUAAAAA-----------AGAAAUAGUGUUUC .......((((((((.....(((.(-(((((((..........)))))))).)))..))))))))....((((((.....-----------.......)))))). ( -27.00) >DroAna_CAF1 23967 105 - 1 GCACAAUGGGAACUGAGCCAGAGUCCCCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUGCCGAAAUACAAAAAAAAAAAACGAGAAAAGAAAUAGUGUCCC ((((..(((.(((((...(((....((((((((..........))))))))..))).))))).))).........................(....).))))... ( -21.60) >consensus GAACAAUGGGAACUGAGCCAAAGUC_CCGCAGGACAAUGACAAUUUGCGGGCGUUGACAGUUGCCCAAAAAGCAUAAAAA_________A_AGAAAUAGUGUUUC ......(((((((((...(((...(.(((((((..........))))))))..))).))))).))))...................................... (-16.72 = -16.96 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:11 2006