Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,089,225 – 5,089,328 |
Length | 103 |
Max. P | 0.937458 |
Location | 5,089,225 – 5,089,328 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 76.19 |
Mean single sequence MFE | -13.15 |
Consensus MFE | -6.97 |
Energy contribution | -6.63 |
Covariance contribution | -0.33 |
Combinations/Pair | 1.33 |
Mean z-score | -2.19 |
Structure conservation index | 0.53 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937458 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5089225 103 + 22224390 UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC------CCAAAAACGCUAGA--AAACAAAAAUACAGAU ......((((((........((((...((((((.....))))))..))))...(((((...))))).......------........))).))--)............... ( -15.80) >DroEre_CAF1 590 98 + 1 UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC------CCAAAAC-GCUAGA--GCA----AAUACAGAU ......((((((........((((...((((((.....))))))..))))...(((((...))))).......------.......-))).))--)..----......... ( -15.20) >DroWil_CAF1 653 90 + 1 UUAAAAUUCAACAGCAACCAUUGUCACCACCCAAGCCAAUGGUGCCACAAAAAUUGCCAAAGGUAAAAAAAACCGACAUCAAA---------------------GAAACAU ......(((....(((.((((((.(.........).)))))))))........(((((...))))).................---------------------))).... ( -12.90) >DroYak_CAF1 607 99 + 1 UUAAAAUUCAGCAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGUCAAAGGUAAAAAGAUC------CCAAAAA-GCUAGA--AAAA---AAAACAGAU ......((((((.((((...((((...((((((.....))))))..))))...))))....((..........------)).....-))).))--)...---......... ( -13.90) >DroMoj_CAF1 578 93 + 1 UUAAAAUUCAACAACAACCAUUGUCACCUCCCAAGCCAAUGGUUCCACAAAAAUUACCAAAGGUAAAAGUAAA------A--------UCAUACAAAAA---AA-AAAAAU ...............((((((((.(.........).)))))))).........(((((...)))))..(((..------.--------...))).....---..-...... ( -10.10) >DroAna_CAF1 458 93 + 1 UUAAAAUUCAACAACAACCAUUGUCACCACCCAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAAUUG------UCAAAGA---------AAAU---CAAACGCAG ......(((....((((...(((((((((.(......).)))))..))))...(((((...)))))....)))------)....))---------)...---......... ( -11.00) >consensus UUAAAAUUCAACAACAACCAUUGUCACCACCAAAGCCGUUGGUGCCACAAAAAUUGCCAAAGGUAAAAAGAUC______CCAAAAA__CUAGA__AAA____AAAACAGAU ..........((((......))))..........(((.(((((............))))).)))............................................... ( -6.97 = -6.63 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:05 2006