Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,082,572 – 5,082,681 |
Length | 109 |
Max. P | 0.684144 |
Location | 5,082,572 – 5,082,681 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.97 |
Mean single sequence MFE | -33.67 |
Consensus MFE | -32.97 |
Energy contribution | -32.97 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.97 |
Structure conservation index | 0.98 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5082572 109 + 22224390 UUGUGGUGAACACGGUGCAUUUAAUAUCGCAGCUAGCGGAUAAUCUGAUUAUUGCCUGCGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU----------- (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).........----------- ( -32.80) >DroSim_CAF1 711 109 + 1 UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUGGCGGAUAACCUGAUUAUUGCCUGUGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU----------- (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).........----------- ( -33.40) >DroYak_CAF1 711 120 + 1 UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUAGCGGACAACCUGAUUAUCGCCUGUGGAGGAUUGCUGCCUCUUCUGGCCAGCGCCACAUCACCCAAUGUAAGUGUUUAAUCUAAAA ......((((((((((((....((((((((.....))((....)).)).))))(((...(((((.......)))))...)))..)))))((((......))))..)))))))........ ( -34.80) >consensus UUGUGGUGAACACGGUGCAUUUGAUAUCGCAACUAGCGGAUAACCUGAUUAUUGCCUGUGGAGGAUUGCUGCCUCUUUUGGCCAGCGCCACGUCACCCAAUGUAAGUAU___________ (((.(((((....(((((........((((.....))))..............(((...(((((.......)))))...)))..)))))...)))))))).................... (-32.97 = -32.97 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:02 2006