Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 5,081,892 – 5,082,012 |
Length | 120 |
Max. P | 0.715011 |
Location | 5,081,892 – 5,082,012 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.78 |
Mean single sequence MFE | -36.80 |
Consensus MFE | -33.65 |
Energy contribution | -34.43 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.03 |
Mean z-score | -1.83 |
Structure conservation index | 0.91 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715011 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 5081892 120 + 22224390 ACCGAAACCCCAGGAAACUGAACAACAAAAGUCGCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA ((((......(((....)))..........(((.(((((((((((((.....((.((((........))))))....)))))))).(((.....))).))))))))....))))...... ( -38.80) >DroSim_CAF1 31 120 + 1 ACCGAAACCCCAGGAAACUGAGCAACAAAAGUCCCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA ((((......(((....)))..........((((.((((((((((((.....((.((((........))))))....)))))))).(((.....))).))))))))....))))...... ( -38.80) >DroYak_CAF1 31 120 + 1 ACCUAAACCCAAGGAAACUGAGCAGCAAAAGUCCCUGGAGGUCGCCGAAGAACUACCUCAGAAACCGGAGGAGCAGGCUGUGGCCAUUGUUAACCAAGUCCUGGACACUUUGGUGGACGA ...........((....))...........(((((..((((((............((((........))))..((((((.(((..........))))).))))))).)))..).)))).. ( -32.80) >consensus ACCGAAACCCCAGGAAACUGAGCAACAAAAGUCCCAGGAGGUCGCCGAAGAACUACCUCAAAAACCAGAGGAGCAGGUGGUGGCCAUUGUCAACCAAGUCCUGGACACUCUGGUAGACGA (((.......(((....)))..........(((.(((((((((((((.....((.((((........))))))....)))))))).(((.....))).)))))))).....)))...... (-33.65 = -34.43 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:00 2006