Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,963,915 – 4,964,028 |
Length | 113 |
Max. P | 0.591852 |
Location | 4,963,915 – 4,964,028 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.26 |
Mean single sequence MFE | -23.80 |
Consensus MFE | -22.05 |
Energy contribution | -21.68 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.12 |
Mean z-score | -1.24 |
Structure conservation index | 0.93 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591852 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4963915 113 - 22224390 CAACAUCCGUUUCUGGGAUUGCUGCGGCUGUUAUUGCCCCAGCGCCUUUAGCAAUCGCAACCCC------UUUCAAUCUUCUCCACGCCCAUGGACCGCCCCCUUUUUUCGCCC-AUCUU ........(((..((((...((((.(((.......))).)))).......((....))......------.................))))..)))..................-..... ( -22.10) >DroSec_CAF1 27978 115 - 1 UAACAUCCGUUUCUGGGAUUGCUGCGGCUGCUAUUGCCCCAGCGCCUUUAGCAAUCGCAACCCCUCC---UUCCAACCUUCUGCACGUCCAUGGACCGCCCACUUUUUUCGCCC-AUCU- ........(((..(((((((((((.(((.(((........))))))..))))))))(((........---...........)))....)))..)))..................-....- ( -24.11) >DroEre_CAF1 30736 111 - 1 CAACAUCCGUUUCUGGGAUUGCUGCGGCUGUUAUUGCCCCAGCGCCUUUGGCAAUCGCAUCCCCUUCA-------UCCUUCUCCACGCCCAUGGACCACCCA-CU-UUCCGCCCCAUCCG ........(((..((((...((((.(((.......))).))))(((...)))................-------............))))..)))......-..-.............. ( -23.90) >DroYak_CAF1 30463 119 - 1 CAACAUCCGUUCCUGGGAUUGCUGCGGCUGUUAUUGCCCCAGCGCCUUUGGCCAUCGCAUCCCCUUCACCCUUCACCCUUCUCCACGCCCAUGGACCGCCCCCCA-UUCCGCCCUCCCCU .......((.(((((((...((((.(((.......))).))))(((...)))...................................)))).))).)).......-.............. ( -25.10) >consensus CAACAUCCGUUUCUGGGAUUGCUGCGGCUGUUAUUGCCCCAGCGCCUUUAGCAAUCGCAACCCCUUC___UUUCAACCUUCUCCACGCCCAUGGACCGCCCACCU_UUCCGCCC_AUCCU ........((((.((((...((((.(((.......))).))))((.....))...................................)))).))))........................ (-22.05 = -21.68 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:01 2006