Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 637,668 – 637,765 |
Length | 97 |
Max. P | 0.851069 |
Location | 637,668 – 637,765 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 67.71 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -11.36 |
Energy contribution | -10.92 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.19 |
Mean z-score | -1.67 |
Structure conservation index | 0.56 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.851069 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 637668 97 + 22224390 ---AACUGGCGGCAUUUUC---GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCAAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGAAAA--AUAUACAAGAAA-----AG ---...((((((.....))---)))).(((((((....(((....))))))))))......-------......((((((.-..(--((....)))...--...))))))...-----.. ( -22.60) >DroPse_CAF1 4417 120 + 1 UGCCAUUUGAAACGUUUUCUUUCUUAUGUGUGAAAUCUGACGCAAGUUUUCACACCAAACAUUCAUUCACACACAUCGUAAUGAUCAAAGGAAUGGAAACAACAAACAACAAGAAGCAUG (((..((((......(((((((.....(((((((....(((....)))))))))).......(((((.((.......)))))))..)))))))((....))........))))..))).. ( -23.30) >DroSec_CAF1 2896 81 + 1 ----------------------GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCCAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGGAAA--AUAAACAAGAAA-----UU ----------------------.(((((((((((....(((....))))))))))...(((-------(......))))..-...--.....))))...--............-----.. ( -15.70) >DroSim_CAF1 4921 81 + 1 ----------------------GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCCAACA-------AAGCAACUUGUGA-GAU--UAGUAAUGGAAA--AUAAACAAGAAA-----UG ----------------------.(((((((((((....(((....))))))))))...(((-------(......))))..-...--.....))))...--............-----.. ( -15.70) >DroPer_CAF1 4591 120 + 1 UGCCAUUUGAAGCGUUUUCUUUCUUAUGUGUGAAAUCUGACGCAAGUUUUCACACCAAACAUUCAUUCACACACAUCGUAAUGAUCAAAGGAAUGGAAACAACAAACAACAAGAAGCAUG (((..((((..(((((...((((........))))...)))))..(((((((..((......(((((.((.......))))))).....))..))))))).........))))..))).. ( -24.30) >consensus ____A_U_G___C_UUUUC___GCCAUGUGUGAAGUCUGACGCAAGUUUUCACACCAAACA_______AAGCAACUUGUGA_GAU__UAGUAAUGGAAA__AUAAACAAGAAA_____UG .......................(((((((((((....(((....))))))))))...............((.....)).............))))........................ (-11.36 = -10.92 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:11 2006