Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,899,812 – 4,899,912 |
Length | 100 |
Max. P | 0.880970 |
Location | 4,899,812 – 4,899,912 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -15.33 |
Consensus MFE | -9.97 |
Energy contribution | -9.53 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -2.05 |
Structure conservation index | 0.65 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.880970 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4899812 100 - 22224390 UUCCCCUUUCAAACAUAUUAACACAUUUU--UUUUUUGUAAAUAAUUCCUAACUCAUGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCGUACA .............................--......((((((..((((((((....))))((((((((.....)))))))).))))....))))))..... ( -17.10) >DroSec_CAF1 50715 102 - 1 UUCGCCUUUCAAACAUCUUUACACAUGUUGGUUUUUUUUGAAUAAUUCCCAACUCGAGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCAUACA .......................((.((((((((((......((((((.......))))))((((((((.....)))))))).)))))))))).))...... ( -18.70) >DroEre_CAF1 53833 95 - 1 UUACCCUUUUAUAGCUCUUUACACAUUUU--U-----UUUAAUAACUAAUAACUUAUAUUACAUUAAGGUACUACCUUAAUGCGGAAAUUCAUUUGCAUACA .............((..............--.-----.........(((((.....)))))((((((((.....)))))))).............))..... ( -10.20) >consensus UUCCCCUUUCAAACAUCUUUACACAUUUU__UUUUUUUUAAAUAAUUCCUAACUCAUGUUACAUUGAGGUAUUACCUUAAUGCGGAAACUAAUUUGCAUACA ................................................................(((((.....)))))(((((((......)))))))... ( -9.97 = -9.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006