Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,894,004 – 4,894,105 |
Length | 101 |
Max. P | 0.534491 |
Location | 4,894,004 – 4,894,105 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 87.05 |
Mean single sequence MFE | -15.04 |
Consensus MFE | -13.54 |
Energy contribution | -13.42 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -1.34 |
Structure conservation index | 0.90 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534491 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4894004 101 + 22224390 CA---------AAAUCACGAAAGGACACCCCAAAACAAUCCCUCAAUUAUAAUUGACUUGACUUUGACUUGCAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA ..---------...((.(....)))..............(((((.............(((.(((((.....))))).)))......((((.......))))))))).... ( -15.40) >DroSec_CAF1 45133 99 + 1 CA---------AAAUCACGAAAGGACCCCCUAAAACAAUCCCUCAUUUAUAAUUGACU--ACUUUGACUUACAAAGCCGAAGAAUUUUCAAAAGACAUGAAGAGGGCAAA ..---------...((.(....)))..............(((((..............--.(((((.((.....)).)))))....((((.......))))))))).... ( -14.70) >DroSim_CAF1 46376 99 + 1 CA---------AAAUCACGAAAGGACCCCCUAAAACAAUCCCUCAUUUAUAAUUGACU--ACUUUGACUAACAAAGCCGAAGAACUUUCAAAAGUCAUGAAGAGGGCAAA ..---------...((.(....)))..............(((((.((((....(((((--.(((((.....)))))..((((...))))...)))))))))))))).... ( -17.10) >DroEre_CAF1 48037 108 + 1 CAAAUAAAAAAAAAACACGAAAGGACCUCCAAAAACAAUUCCUCAUUUACAAUUGACU--ACUUUGACUUACAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA ......................((....)).........(((((..............--.(((((.((.....)).)))))....((((.......))))))))).... ( -12.50) >DroYak_CAF1 46068 107 + 1 CUAACAAAG-GAACUCACGAAAGGACCCCCAAAAACAAUCCCUCAUUUUCAAUUGAUU--ACUUUGACUUACAAGACCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA ........(-(...((.(....)))...)).........(((((.((.((..((((..--.(((((...........))))).....))))..))...)).))))).... ( -15.50) >consensus CA_________AAAUCACGAAAGGACCCCCAAAAACAAUCCCUCAUUUAUAAUUGACU__ACUUUGACUUACAAAGCCGAAGAACUUUCAAAAGACAUGAAGAGGGCAAA .................(....)................(((((.................(((((.((.....)).)))))....((((.......))))))))).... (-13.54 = -13.42 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:40 2006