Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 4,862,657 – 4,862,755 |
Length | 98 |
Max. P | 0.952006 |
Location | 4,862,657 – 4,862,755 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 89.46 |
Mean single sequence MFE | -29.46 |
Consensus MFE | -25.68 |
Energy contribution | -26.48 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -1.77 |
Structure conservation index | 0.87 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 4862657 98 + 22224390 GCAAAUUGCGCUUGCGAAGCGAGC--------------------UGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ((..((((((((.((((((.(((.--------------------((......)).)))..)))))).))).))))).......((((((..............)))))).......)) ( -24.14) >DroSec_CAF1 14469 111 + 1 GCAAAUUGCGCUUGCGAAGCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ((.....))((((((...))))))..-------..(((...((((((((((....((..(......(((((((((.......))))))))))..))...)))))))))).....))). ( -31.30) >DroSim_CAF1 14454 111 + 1 GCAAAUUGCGCUUGCGAAGCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ((.....))((((((...))))))..-------..(((...((((((((((....((..(......(((((((((.......))))))))))..))...)))))))))).....))). ( -31.30) >DroEre_CAF1 17504 109 + 1 GCA--AUGCGCUUGCGAACCGAGCAA-------CUUCCAUCUGCAGCAUUUCUAUCUCUUCUCUGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ...--..(((((((.....)))))..-------...((...((((((((((...........(((.(((((((((.......)))))))))..)))...)))))))))).....)))) ( -27.94) >DroYak_CAF1 14657 118 + 1 GCAAAAUGCGCUUGAGAAGCGAGCAACGAGCCACUUCCAUCUGCAGCAUUUCUAUCUUUUCUCCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ((.....))(((((.((((.(.((.....))).))))....((((((((((....((..(......(((((((((.......))))))))))..))...))))))))))....))))) ( -32.60) >consensus GCAAAUUGCGCUUGCGAAGCGAGCAA_______CUUCCAUCUGCAGCAUUUCUAUCUUUUCUUCGCUGGCUGCAAUAAAACUUUGCAGUUAAUUAGUCAAAAUGCUGCACAACCGGGC ((.....))(((((.....))))).................(((((((((((((............(((((((((.......)))))))))..)))...))))))))))......... (-25.68 = -26.48 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:00 2006